View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6084_high_12 (Length: 239)
Name: NF6084_high_12
Description: NF6084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6084_high_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 65 - 223
Target Start/End: Original strand, 16899295 - 16899453
Alignment:
| Q |
65 |
cctacacgtctctctcctttaaatatctataaaggtccgtttgatgcaagtaagcagaagaacaagacagacatttgagttactgacaattttttgtcat |
164 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
|
|
| T |
16899295 |
cctacacgtctctctcctttaaatatctataaaggtccgtttgatgcaagtaagcagaagaacaagacaaacatttgagttacagacaattttttgtcat |
16899394 |
T |
|
| Q |
165 |
gatatttggtagacagtataaaacacaaacaaaacagtgaaatttactacgattttact |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16899395 |
gatatttggtagacagtataaaacacaaacaaaacagtgaaatttactacgattttact |
16899453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 16899250 - 16899287
Alignment:
| Q |
1 |
ttttatttatttttacctcattcaactattaatgccaa |
38 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
16899250 |
ttttttttttttttacctcattcaactattaatgccaa |
16899287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University