View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6084_high_9 (Length: 251)

Name: NF6084_high_9
Description: NF6084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6084_high_9
NF6084_high_9
[»] chr7 (2 HSPs)
chr7 (1-243)||(33541905-33542147)
chr7 (86-157)||(46950242-46950313)
[»] chr2 (4 HSPs)
chr2 (21-169)||(35549379-35549533)
chr2 (48-169)||(14392072-14392193)
chr2 (49-182)||(38411690-38411821)
chr2 (27-63)||(28646614-28646650)
[»] chr1 (6 HSPs)
chr1 (48-156)||(11672104-11672212)
chr1 (30-156)||(3446965-3447090)
chr1 (37-156)||(11670423-11670544)
chr1 (21-158)||(10163210-10163351)
chr1 (48-155)||(35238568-35238674)
chr1 (54-183)||(36814484-36814613)
[»] chr5 (4 HSPs)
chr5 (48-182)||(33623007-33623141)
chr5 (107-182)||(13857794-13857870)
chr5 (107-182)||(33625294-33625369)
chr5 (109-182)||(36070344-36070417)
[»] chr4 (2 HSPs)
chr4 (98-175)||(2569428-2569506)
chr4 (58-148)||(3070900-3070989)
[»] chr6 (4 HSPs)
chr6 (133-183)||(1515767-1515818)
chr6 (133-183)||(1517858-1517909)
chr6 (133-183)||(1519945-1519996)
chr6 (29-148)||(12337864-12337983)
[»] chr8 (3 HSPs)
chr8 (21-169)||(21240542-21240691)
chr8 (107-183)||(1027815-1027892)
chr8 (127-183)||(38063748-38063805)


Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 33542147 - 33541905
Alignment:
Q  1 atctcataaggtgattaatcaaatactcatatttaatgtctgacacgcatcaaataaaattactttcaattgagagaattaatgaaattttttcttcatt 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33542147 atctcataaagtgattaatcaaatactcatatttaatgtctgacacgcatcaaataaaattactttcaattgagagaattagtgaaattttttcttcatt 33542048  T
Q  101 tttatgttattctctttaaacacacttaaaatgtctctatttaaatttcgctttagactaaaaatacatcggaccggccctgcaatcaaacacatgcact 200  Q
    ||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33542047 tttatgttattatctctaaacacacttaaaatatctctatttaaatttcgctttagactaaaaatacatcggaccggccctgcaatcaaacacatgcact 33541948  T
Q  201 taataatgtaaaatttcactttcaggactggtaagcctatgct 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  33541947 taataatgtaaaatttcactttcaggactggtaagcctatgct 33541905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 157
Target Start/End: Original strand, 46950242 - 46950313
Alignment:
Q  86 aattttttcttcatttttatgttattctctttaaacacacttaaaatgtctctatttaaatttcgctttaga 157  Q
    |||||||||||  ||||| ||||||||||| || ||| ||||||||  ||||||||||||||| | ||||||    
T  46950242 aattttttcttattttttgtgttattctctctatacatacttaaaagatctctatttaaattttgatttaga 46950313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 35549533 - 35549379
Alignment:
Q  21 aaatactcatatttaat----gtctgacacgcatcaaataaaattactttcaattgagagaattaatgaaattttttct-tcatttttatgttattctct 115  Q
    |||||||||||||||||    |||||||||  |||| ||| |||||||||| |||||| ||| | ||||| | |||| | | | |||| | |||||||||    
T  35549533 aaatactcatatttaatcagtgtctgacacaaatcatatagaattactttcgattgagggaacttatgaattcttttttgttagttttgtcttattctct 35549434  T
Q  116 ttaaacacacttaaaatgtctctatttaaatttcgctttagac-taaaaatacat 169  Q
     ||||| ||||||||| |||||||||||||||| ||||||| | |||||||||||    
T  35549433 ctaaacgcacttaaaaagtctctatttaaattttgctttaggcgtaaaaatacat 35549379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 169
Target Start/End: Original strand, 14392072 - 14392193
Alignment:
Q  48 catcaaataaaattactttcaattgagagaattaatgaaattttttcttcatttttatgttattctctttaaacacacttaaaatgtctctatttaaatt 147  Q
    ||||| ||| ||||||||||||||||| ||| | ||||| |||||| || | |||| | |||||||||  |||| |||||||||   |||||||||||||    
T  14392072 catcatatagaattactttcaattgagggaacttatgaatttttttgtt-aattttgttttattctctccaaacgcacttaaaagacctctatttaaatt 14392170  T
Q  148 tcgctttaga-ctaaaaatacat 169  Q
    || | ||||| ||||||||||||    
T  14392171 tctcattagacctaaaaatacat 14392193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 182
Target Start/End: Complemental strand, 38411821 - 38411690
Alignment:
Q  49 atcaaataaaattactttcaattgagagaattaatgaaattttttcttcatttttatgttattctctttaaacacacttaaaatgtctctatttaaattt 148  Q
    |||| |||||||||||||| |||||  ||| | ||||| ||||||||| | |||| | ||||||||| || || ||| ||||| |  |||||||||||||    
T  38411821 atcatataaaattactttcgattgaaggaacttatgaatttttttctt-aattttgtcttattctctctacacgcacataaaagg--tctatttaaattt 38411725  T
Q  149 cgctttaga-ctaaaaatacatcggaccggccctg 182  Q
     | |||||| |||||||||||| ||| ||||||||    
T  38411724 tgttttagacctaaaaatacattggatcggccctg 38411690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 28646614 - 28646650
Alignment:
Q  27 tcatatttaatgtctgacacgcatcaaataaaattac 63  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  28646614 tcatatttaatgtctgacacgcctcaaacaaaattac 28646650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 156
Target Start/End: Complemental strand, 11672212 - 11672104
Alignment:
Q  48 catcaaataaaattactttcaattgagagaattaatgaaattttttcttcatttttatgttattctctttaaacacacttaaaatgtctctatttaaatt 147  Q
    ||||| ||||||||| |||| |||||  ||| | ||| |||||||| || | |||| | ||||||||| ||||  ||||||||| |||||||||||||||    
T  11672212 catcatataaaattattttcgattgaaggaacttatggaatttttttttaaattttgtcttattctctctaaatgcacttaaaaggtctctatttaaatt 11672113  T
Q  148 tcgctttag 156  Q
    |||||||||    
T  11672112 tcgctttag 11672104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 3447090 - 3446965
Alignment:
Q  30 tatttaatgtctgacacgcatcaaataaaattactttcaattgagagaattaatgaaattttttcttcatttttatgttattctctttaaacacacttaa 129  Q
    |||||| |||||||||| ||||| |||||||||||||  || || | || | ||| | |||||| || |||||  | ||||||||||||||||||||| |    
T  3447090 tatttagtgtctgacacacatcatataaaattacttttcatcgaaaaaacttatggattttttttttaattttg-tcttattctctttaaacacacttga 3446992  T
Q  130 aatgtctctatttaaatttcgctttag 156  Q
    || |  |||||| ||||||||||||||    
T  3446991 aaggcttctattcaaatttcgctttag 3446965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 156
Target Start/End: Complemental strand, 11670544 - 11670423
Alignment:
Q  37 tgtctgacacgcatcaaataaaattactttcaattgagagaattaatgaaattttttcttc-at-ttttatgttattctctttaaacacacttaaaatgt 134  Q
    |||| ||||| ||||| ||||||||| |||| |||||| ||| | ||| |||||||| ||| || |||| | ||||| |||  |||| ||||||||| |     
T  11670544 tgtcagacacacatcatataaaattattttcgattgagggaacttatggaatttttttttctatattttgtcttattatctccaaacgcacttaaaaggc 11670445  T
Q  135 ctctatttaaatttcgctttag 156  Q
    ||||||||||||||||||||||    
T  11670444 ctctatttaaatttcgctttag 11670423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 10163210 - 10163351
Alignment:
Q  21 aaatactcatatttaat----gtctgacacgcatcaaataaaattactttcaattgagagaattaatgaaattttttcttcatttttatgttattctctt 116  Q
    |||||||||||||||||    |||||| || ||||| ||| |||||||||| |||||| ||| | ||| ||||||||  | | |||| | ||||||| |     
T  10163210 aaatactcatatttaattagtgtctgatacacatcatatagaattactttcgattgagggaacttatggaatttttttcttaattttgtcttattctatc 10163309  T
Q  117 taaacacacttaaaatgtctctatttaaatttcgctttagac 158  Q
    | ||| || ||||||   ||||||||||||||||||||||||    
T  10163310 tcaacgcatttaaaagacctctatttaaatttcgctttagac 10163351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 155
Target Start/End: Complemental strand, 35238674 - 35238568
Alignment:
Q  48 catcaaataaaattactttcaattgagagaattaatgaaattttttcttcatttttatgttattctctttaaacacacttaaaatgtctctatttaaatt 147  Q
    ||||| ||| |||||||||  |||||| ||| | ||||| |||||| || ||||| || ||||||||| ||||| ||||||||||   | ||||||||||    
T  35238674 catcatatataattacttttgattgagggaacttatgaatttttttgttaatttt-atcttattctctctaaacgcacttaaaatacatatatttaaatt 35238576  T
Q  148 tcgcttta 155  Q
    ||||||||    
T  35238575 tcgcttta 35238568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 183
Target Start/End: Original strand, 36814484 - 36814613
Alignment:
Q  54 ataaaattactttcaattgagagaattaatgaaattttttcttcatttttatgttattctctttaaacacacttaaaatgtctctatttaaatttcgctt 153  Q
    ||||||||| |||| |||||| ||| | ||| ||||||||  | || ||| | ||||||||| | | |||||||||||||||||||||||| ||||  ||    
T  36814484 ataaaattattttcgattgagggaacttatggaatttttttcttatgtttgtcttattctctctga-cacacttaaaatgtctctatttaagtttcattt 36814582  T
Q  154 ta-gactaaaaatacatcggaccggccctgc 183  Q
    || | ||||||||||||  | ||||||||||    
T  36814583 taggcctaaaaatacattagtccggccctgc 36814613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 48 - 182
Target Start/End: Complemental strand, 33623141 - 33623007
Alignment:
Q  48 catcaaataaaattactttcaattgagagaattaatgaaattttttcttcatttttatgttattctctttaaacacacttaaaatgtctctatttaaatt 147  Q
    ||||| ||| |||||||||  ||||||  |||| ||||| ||||||  | | |||| | ||||||||| ||||| |||||||||  ||| ||||||||||    
T  33623141 catcatatataattacttttgattgaggaaatttatgaattttttttgttaattttgtcttattctctctaaacgcacttaaaaaatctttatttaaatt 33623042  T
Q  148 tcgctttagactaaaaatacatcggaccggccctg 182  Q
    |||||||||||  ||||||||| || ||| |||||    
T  33623041 tcgctttagacataaaatacattgggccgaccctg 33623007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 13857870 - 13857794
Alignment:
Q  107 ttattctctttaaacacacttaaaatgtctctatttaaatttcgctttaga-ctaaaaatacatcggaccggccctg 182  Q
    ||||||||| |||||||| |||||||| |||| |||||||||||||||||| ||| ||| ||||| | |||||||||    
T  13857870 ttattctctctaaacacatttaaaatgcctctgtttaaatttcgctttagacctagaaacacatcaggccggccctg 13857794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 107 - 182
Target Start/End: Complemental strand, 33625369 - 33625294
Alignment:
Q  107 ttattctctttaaacacacttaaaatgtctctatttaaatttcgctttagactaaaaatacatcggaccggccctg 182  Q
    ||||||||| ||||| |||||||||  ||| |||||||||||||||||||||  ||||||||| || ||| |||||    
T  33625369 ttattctctctaaacgcacttaaaaaatctttatttaaatttcgctttagacataaaatacattgggccgaccctg 33625294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 36070417 - 36070344
Alignment:
Q  109 attctctttaaacacacttaaaatgtctctatttaaatttcgcttta-gactaaaaatacatcggaccggccctg 182  Q
    ||||||| ||||| ||||||||| | ||||||||||||||||| ||| | |||||||||||| ||||| ||||||    
T  36070417 attctctctaaacgcacttaaaa-gcctctatttaaatttcgcattaggcctaaaaatacattggaccagccctg 36070344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 175
Target Start/End: Complemental strand, 2569506 - 2569428
Alignment:
Q  98 atttttatgttattctctttaaacacacttaaaatgtctctatttaaatttcgct-ttagactaaaaatacatcggacc 175  Q
    |||||| |||||||||||||||||||  |||||||||| |||||||||||||| | || | |||||||||||| |||||    
T  2569506 atttttgtgttattctctttaaacacgtttaaaatgtcgctatttaaatttcgttgttggtctaaaaatacattggacc 2569428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 148
Target Start/End: Complemental strand, 3070989 - 3070900
Alignment:
Q  58 aattactttcaattgagagaattaatgaaattttttcttcatttttatgttattctctttaaacacacttaaaatgtctctatttaaattt 148  Q
    |||||||||  |||||| ||| | ||||| ||||||||| ||||| || ||||||||| ||||| ||||||||||  || |||||||||||    
T  3070989 aattacttttcattgagggaacttatgaatttttttcttaatttt-attttattctctctaaacgcacttaaaatacctatatttaaattt 3070900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 1515818 - 1515767
Alignment:
Q  133 gtctctatttaaatttcgctttagac-taaaaatacatcggaccggccctgc 183  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||||||||||    
T  1515818 gtctctatctaaatttcgctttagacttaaaaatacattggaccggccctgc 1515767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 1517909 - 1517858
Alignment:
Q  133 gtctctatttaaatttcgctttagac-taaaaatacatcggaccggccctgc 183  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||||||||||    
T  1517909 gtctctatctaaatttcgctttagacttaaaaatacattggaccggccctgc 1517858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 183
Target Start/End: Complemental strand, 1519996 - 1519945
Alignment:
Q  133 gtctctatttaaatttcgctttagac-taaaaatacatcggaccggccctgc 183  Q
    |||||||| ||||||||||||||||| ||||||||||| |||||||||||||    
T  1519996 gtctctatctaaatttcgctttagacttaaaaatacattggaccggccctgc 1519945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 148
Target Start/End: Original strand, 12337864 - 12337983
Alignment:
Q  29 atatttaatgtctgacacgcatcaaataaaattactttcaattgagagaattaatgaaa-ttttttcttcatttttatgttattctctttaaacacactt 127  Q
    ||||||| ||||| | ||| |||||||| ||||||||||||| | |  || | |||||| ||||||||| |||||| ||||||| ||| || ||||||||    
T  12337864 atatttagtgtctaatacgaatcaaatataattactttcaatcgcggaaaattatgaaatttttttcttaattttt-tgttattttctctatacacactt 12337962  T
Q  128 aaaatgtctctatttaaattt 148  Q
    |||| | || |||||||||||    
T  12337963 aaaaagcctttatttaaattt 12337983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 21 - 169
Target Start/End: Original strand, 21240542 - 21240691
Alignment:
Q  21 aaatactcatatttaatgtctgacacgcatcaaataaaattactttcaattgagagaattaat-gaaattttttcttcatttttatgttattctctttaa 119  Q
    ||||||||||||||| ||||| |||| ||||| ||| |||||||||| ||||||  || | || ||| || |||||| | |||| | ||||||||| |||    
T  21240542 aaatactcatatttagtgtctcacacacatcatatagaattactttcgattgaggaaactgatagaatttctttctt-aattttgtcttattctctctaa 21240640  T
Q  120 acacacttaaaatgtctctatttaaatttcgcttta-gactaaaaatacat 169  Q
    ||| ||||||||   |||||||||||||| | |||| | ||||||||||||    
T  21240641 acaaacttaaaaaacctctatttaaattttgttttaggcctaaaaatacat 21240691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 107 - 183
Target Start/End: Complemental strand, 1027892 - 1027815
Alignment:
Q  107 ttattctctttaaacacacttaaaatgtctctatttaaatttcgctttaga-ctaaaaatacatcggaccggccctgc 183  Q
    ||||||||||||||| || ||| ||   |||||||||||||| |||||||| ||||| |||||| | |||||||||||    
T  1027892 ttattctctttaaacgcatttagaagacctctatttaaattttgctttagacctaaatatacattgtaccggccctgc 1027815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 38063805 - 38063748
Alignment:
Q  127 taaaatgtctctatttaaatttcgctttaga-ctaaaaatacatcggaccggccctgc 183  Q
    ||||||| ||||||||||||||||||||||| ||||| ||||||  | ||||||||||    
T  38063805 taaaatgcctctatttaaatttcgctttagacctaaatatacattaggccggccctgc 38063748  T

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