View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6084_low_10 (Length: 250)

Name: NF6084_low_10
Description: NF6084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6084_low_10
NF6084_low_10
[»] chr3 (3 HSPs)
chr3 (1-240)||(1836413-1836652)
chr3 (1-240)||(41365557-41365795)
chr3 (57-131)||(47601986-47602058)
[»] chr2 (5 HSPs)
chr2 (52-134)||(34765145-34765225)
chr2 (87-134)||(12880587-12880632)
chr2 (52-100)||(16419947-16419995)
chr2 (51-134)||(12985378-12985459)
chr2 (52-100)||(16246636-16246684)
[»] chr4 (4 HSPs)
chr4 (52-142)||(26272739-26272827)
chr4 (54-109)||(41337536-41337591)
chr4 (53-131)||(47192700-47192776)
chr4 (52-144)||(33710887-33710978)
[»] chr5 (2 HSPs)
chr5 (52-105)||(22816841-22816894)
chr5 (52-110)||(36612233-36612291)
[»] chr1 (1 HSPs)
chr1 (52-105)||(45903917-45903970)
[»] chr7 (1 HSPs)
chr7 (52-100)||(42496885-42496933)


Alignment Details
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 1836413 - 1836652
Alignment:
Q  1 aagccatcctctccgaactcttcaaaatccaattcctaagcataccctaaacagtgttgtcaaatatcagccatggcggatatcgttggcgggtttttgg 100  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  1836413 aagccatcctatccgaactcttcaaaatccaattcctaagcataccctaaacaatgttgtcaaatatcagccatggcggatatcgttggcgggtttttgg 1836512  T
Q  101 ctttctgccatgtggccaattttgtgaaggatggtgacgccatgacatcatccatcggacatagtggcgctatatgtcagccggtatggcgggtttttag 200  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1836513 ctttctgccatgtggccaattttgtgaaggatggtgactccatgacatcatccatcggacatagtggcgctatatgtcagccggtatggcgggtttttag 1836612  T
Q  201 ctctctgccatggtcggccatcgacaatactaaccctatg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1836613 ctctctgccatggtcggccatcgacaatactaaccctatg 1836652  T

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Target: chr3; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 41365795 - 41365557
Alignment:
Q  1 aagccatcctctccgaactcttcaaaatccaattcctaagcataccctaaacagtgttgtcaaatatcagccatggcggatatcgttggcgggtttttgg 100  Q
    ||||| |||||||  ||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||| |||||  |||||||    
T  41365795 aagccctcctctctaaactcttcaaaatccaattcccaagcataccctatacagtgttgtcaaatctcagccatggcggatatcggtggcgt-tttttgg 41365697  T
Q  101 ctttctgccatgtggccaattttgtgaaggatggtgacgccatgacatcatccatcggacatagtggcgctatatgtcagccggtatggcgggtttttag 200  Q
    |||||||||||||||||||||||| || ||||||||| |||| | |||||| |||||||||| ||||||||||||||||||||||||||||||||||||     
T  41365696 ctttctgccatgtggccaattttgggatggatggtgatgccacggcatcatacatcggacatggtggcgctatatgtcagccggtatggcgggtttttaa 41365597  T
Q  201 ctctctgccatggtcggccatcgacaatactaaccctatg 240  Q
    ||||||||||||||||||||||||||| ||| ||||||||    
T  41365596 ctctctgccatggtcggccatcgacaacactgaccctatg 41365557  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 131
Target Start/End: Complemental strand, 47602058 - 47601986
Alignment:
Q  57 ttgtcaaatatcagccatggcggatatcgttggcgggtttttggctttctgccatgtggccaattttgtgaagga 131  Q
    |||||||||||  |||||||  ||||||  ||||||||||||||||||||| ||  |||||| ||||||||||||    
T  47602058 ttgtcaaatattggccatggaagatatcagtggcgggtttttggctttctgaca--tggccagttttgtgaagga 47601986  T

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Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 52 - 134
Target Start/End: Original strand, 34765145 - 34765225
Alignment:
Q  52 cagtgttgtcaaatatcagccatggcggatatcgttggcgggtttttggctttctgccatgtggccaattttgtgaaggatgg 134  Q
    |||||||||||||||||||||||||| ||||||  ||||||||||||||||||  ||||  ||||||||||||||||||||||    
T  34765145 cagtgttgtcaaatatcagccatggcagatatcagtggcgggtttttggcttttcgcca--tggccaattttgtgaaggatgg 34765225  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 134
Target Start/End: Original strand, 12880587 - 12880632
Alignment:
Q  87 tggcgggtttttggctttctgccatgtggccaattttgtgaaggatgg 134  Q
    |||||||||||||||||||||||  || ||||||||||||||||||||    
T  12880587 tggcgggtttttggctttctgcc--gtagccaattttgtgaaggatgg 12880632  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 16419995 - 16419947
Alignment:
Q  52 cagtgttgtcaaatatcagccatggcggatatcgttggcgggtttttgg 100  Q
    ||||||||||||||||||| |||||||||||||| ||| || |||||||    
T  16419995 cagtgttgtcaaatatcagtcatggcggatatcggtggtggatttttgg 16419947  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 134
Target Start/End: Complemental strand, 12985459 - 12985378
Alignment:
Q  51 acagtgttgtcaaatatcagccatggcggatatcgttggcgggtttttggctttctgccatgtggccaattttgtgaaggatgg 134  Q
    |||||||||| ||||||  ||||||| |||||| | ||| ||| |||||| ||||  |||||  ||||||||||||||||||||    
T  12985459 acagtgttgttaaatattggccatggtggatatggatggtggggttttggttttccaccatg--gccaattttgtgaaggatgg 12985378  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Original strand, 16246636 - 16246684
Alignment:
Q  52 cagtgttgtcaaatatcagccatggcggatatcgttggcgggtttttgg 100  Q
    |||||||||||||||| ||||||| |||||||||  ||||| |||||||    
T  16246636 cagtgttgtcaaatattagccatgacggatatcggcggcggatttttgg 16246684  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 142
Target Start/End: Complemental strand, 26272827 - 26272739
Alignment:
Q  52 cagtgttgtcaaatatcagccatggcggatatcgttggcgggtttttggctttctgccatgtggccaattttgtgaaggatggtgacgcca 142  Q
    ||||||||||||||||| ||| |||||||||| | |||| | | |||||||||  ||||  |||||||||||||||| ||||||| |||||    
T  26272827 cagtgttgtcaaatatcggccttggcggatattggtggcagctctttggctttaagcca--tggccaattttgtgaaagatggtggcgcca 26272739  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 109
Target Start/End: Complemental strand, 41337591 - 41337536
Alignment:
Q  54 gtgttgtcaaatatcagccatggcggatatcgttggcgggtttttggctttctgcc 109  Q
    ||||||||||||||  | |||||||||||||| |||||||||||||||||| ||||    
T  41337591 gtgttgtcaaatattggtcatggcggatatcgatggcgggtttttggctttatgcc 41337536  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 131
Target Start/End: Complemental strand, 47192776 - 47192700
Alignment:
Q  53 agtgttgtcaaatatcagccatggcggatatcgttggcgggtttttggctttctgccatgtggccaattttgtgaagga 131  Q
    |||||||||||||||  |||||||| ||||||| |||| ||||||||||||||  |||| |  ||||||||||||||||    
T  47192776 agtgttgtcaaatattggccatggcagatatcggtggcaggtttttggctttccaccattt--ccaattttgtgaagga 47192700  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 144
Target Start/End: Original strand, 33710887 - 33710978
Alignment:
Q  52 cagtgttgtcaaatatcagccatggc-ggatatcgttggcgggtttttggctttctgccatgtggccaattttgtgaaggatggtgacgccatg 144  Q
    ||||||||||||||||| |||||||| |||||| | ||| || |||||||||||   |||||  ||||||||| |||||||||||| |||||||    
T  33710887 cagtgttgtcaaatatcggccatggcaggatattggtgggggttttttggctttactccatg--gccaattttctgaaggatggtggcgccatg 33710978  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 22816894 - 22816841
Alignment:
Q  52 cagtgttgtcaaatatcagccatggcggatatcgttggcgggtttttggctttc 105  Q
    ||||||||||||||||| ||||||||||||| |  |||||| ||||||||||||    
T  22816894 cagtgttgtcaaatatcggccatggcggatagcagtggcggttttttggctttc 22816841  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 110
Target Start/End: Original strand, 36612233 - 36612291
Alignment:
Q  52 cagtgttgtcaaatatcagccatggcggatatcgttggcgggtttttggctttctgcca 110  Q
    ||||||||||||||||| |||||||| ||||||  |||||| |||| |||| |||||||    
T  36612233 cagtgttgtcaaatatccgccatggcagatatctgtggcggtttttgggctctctgcca 36612291  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 105
Target Start/End: Complemental strand, 45903970 - 45903917
Alignment:
Q  52 cagtgttgtcaaatatcagccatggcggatatcgttggcgggtttttggctttc 105  Q
    ||||||||||||||||| |||||| | ||||||  |||||||||||||||||||    
T  45903970 cagtgttgtcaaatatcggccatgacagatatcagtggcgggtttttggctttc 45903917  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 42496933 - 42496885
Alignment:
Q  52 cagtgttgtcaaatatcagccatggcggatatcgttggcgggtttttgg 100  Q
    |||||||||||||||| || |||||||||| ||| |||||| |||||||    
T  42496933 cagtgttgtcaaatattagtcatggcggatgtcggtggcggatttttgg 42496885  T

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