View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6084_low_11 (Length: 241)
Name: NF6084_low_11
Description: NF6084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6084_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 17 - 230
Target Start/End: Original strand, 1835881 - 1836093
Alignment:
| Q |
17 |
attagttcattctagctaattgatcatggaatacgctattttannnnnnnnnnaattatgttgtgt------atgttgtttggaaacgaatagttgatta |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
1835881 |
attagttcattctagctaattgatcatggaatacgctatttt------tttttaattatgttgtgttagtgtatgtagtttggaaacgaatagttgatta |
1835974 |
T |
|
| Q |
111 |
ctgaatgttgnnnnnnnnatgatattattatgattatgaaactggagaaggtgctgttagttgcattttggtttggtaaacaagtaatttctatatgatt |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1835975 |
ctgaatgttgttttttt-atgatattattatgattatgaaactggagaaggtgctgttagttgcattttggtttggtaaacaagttatttctatatgatt |
1836073 |
T |
|
| Q |
211 |
tgtggcagtttgcatttcat |
230 |
Q |
| |
|
||||||||||||| |||||| |
|
|
| T |
1836074 |
tgtggcagtttgcgtttcat |
1836093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 230
Target Start/End: Complemental strand, 41366300 - 41366090
Alignment:
| Q |
17 |
attagttcattctagctaattgatcatggaatacgctattttannnnnnnnnnaattatgttgtgt------atgttgtttggaaacgaatagttgatta |
110 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
41366300 |
attagttcattcgagctaattgatcatggaatacgctatttt--------tttaattatgttgtgttagtgtatgtagtttggaaacgaatagttgatta |
41366209 |
T |
|
| Q |
111 |
ctgaatgttgnnnnnnnnatgatattattatgattatgaaactggagaaggtgctgttagttgcattttggtttggtaaacaagtaatttctatatgatt |
210 |
Q |
| |
|
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||| |
|
|
| T |
41366208 |
ctgaatgttgtttattt-atgatgttattatgattatgaaactggagaaggtgctgttagttgcattttggtttggcaaacaagttataactatatgatt |
41366110 |
T |
|
| Q |
211 |
tgtggcagtttgcatttcat |
230 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
41366109 |
tgtggcagtttgcagttcat |
41366090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University