View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6084_low_15 (Length: 219)
Name: NF6084_low_15
Description: NF6084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6084_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 24948582 - 24948765
Alignment:
| Q |
17 |
cattttcctcctctcgttctctatcttcatcgcccaaaagcattttcttgcttccactctctctatatgttaattgccaaactcatggctacttcttctg |
116 |
Q |
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||||||| ||||||||||||| |||||||| ||| | |||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
24948582 |
cattttcttcctctcgttctcaatcttcattgcctagaagcattttcttccttccactctctctgt--gttaattgccaaactcatggctacttcttcta |
24948679 |
T |
|
| Q |
117 |
tcaaatattcaccttcaccaatcaccacccacactactccatttaaaacataacccgtatattatatgaatttcttgttgtacctttg |
204 |
Q |
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| T |
24948680 |
tcaaatactcaccttcaccaatcacca--cacgctactccatttaacccataacccatataatatatgaatttcttgttgtacctttg |
24948765 |
T |
|
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Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 17 - 204
Target Start/End: Original strand, 40828961 - 40829144
Alignment:
| Q |
17 |
cattttcctcctctcgttctctatcttcatcgcccaaaagcattttcttgcttccactctctctatatgttaattgccaaactcatggctacttcttctg |
116 |
Q |
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| T |
40828961 |
cattttcttcctctcgttctcaatcttcattgcctagaagcattttcttccttccactctctctgt--gttaattgccaaactcatggctacttcttcta |
40829058 |
T |
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| Q |
117 |
tcaaatattcaccttcaccaatcaccacccacactactccatttaaaacataacccgtatattatatgaatttcttgttgtacctttg |
204 |
Q |
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||||||| ||||||||||||||||||| ||| ||||||||||||| |||||||| |||| |||||||||||||||||||||||||| |
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| T |
40829059 |
tcaaatactcaccttcaccaatcacca--cacgctactccatttaacccataacccatataatatatgaatttcttgttgtacctttg |
40829144 |
T |
|
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Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 11744734 - 11744551
Alignment:
| Q |
17 |
cattttcctcctctcgttctctatcttcatcgcccaaaagcattttcttgcttccactctctctatatgttaattgccaaactcatggctacttcttctg |
116 |
Q |
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||||||| |||||||| | || |||||||| ||| | |||||||||||| |||||||||||||| | |||||||||||||||||||| |||||||||| |
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| T |
11744734 |
cattttcttcctctcgctttcaatcttcattgcctagaagcattttcttccttccactctctctgt--gttaattgccaaactcatggttacttcttcta |
11744637 |
T |
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| Q |
117 |
tcaaatattcaccttcaccaatcaccacccacactactccatttaaaacataacccgtatattatatgaatttcttgttgtacctttg |
204 |
Q |
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||||||| ||||||||||||||||||| ||| ||||||||||||| |||||||| |||| |||||||||||||||||||||||||| |
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| T |
11744636 |
tcaaatactcaccttcaccaatcacca--cacgctactccatttaacccataacccatataatatatgaatttcttgttgtacctttg |
11744551 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 17 - 204
Target Start/End: Complemental strand, 98275 - 98099
Alignment:
| Q |
17 |
cattttcctcctctcgttctctatcttcatcgcccaaaagcattttcttgcttccactctctctatatgttaattgccaaactcatggctacttcttctg |
116 |
Q |
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||||||| || |||||||||| |||||||| ||||| |||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| |
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| T |
98275 |
cattttcttcatctcgttctcaatcttcattgcccagaagcattttcttccttccactctctctgt--gttaattgccaaactcatggctacttcttcta |
98178 |
T |
|
| Q |
117 |
tcaaatattcaccttcaccaatcaccacccacactactccatttaaaacataacccgtatattatatgaatttcttgttgtacctttg |
204 |
Q |
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||||||||||||||||||||||||| | ||| |||||||||| ||||| |||| |||||||||||||||||||||||||| |
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| T |
98177 |
tcaaatattcaccttcaccaatcacga--cacgctactccatt-------taaccaatataatatatgaatttcttgttgtacctttg |
98099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 24975426 - 24975388
Alignment:
| Q |
65 |
tgcttccactctctctatatgttaattgccaaactcatggc |
105 |
Q |
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| T |
24975426 |
tgcttccactctctctat--gttaattgccaaactcatggc |
24975388 |
T |
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