View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6084_low_2 (Length: 496)
Name: NF6084_low_2
Description: NF6084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6084_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 467; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 9 - 479
Target Start/End: Original strand, 5866159 - 5866629
Alignment:
| Q |
9 |
gataatactgaaaattctccaaggagatctctcatcaataaagatcccaccaatttcctcaacacaaatctcaaattgccacttttaagctgccgagtaa |
108 |
Q |
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| T |
5866159 |
gataatactgaaaattctccaaggagatctctcatcaataaagatcccaccaatttcctcaacacaaatctcaaattgccacttttaagctgccgagtaa |
5866258 |
T |
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| Q |
109 |
tgcttcttttccatatgtttatgcaatgcaatgataatctcactatatataccttcaaatattttgttaacttgatattttgtttcctttccacccttag |
208 |
Q |
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| T |
5866259 |
tgcttcttttccatatgtttatgcaatgcaatgataatctcactatatataccttcaaatattttgttaacttgatattttgtttcctttccacccttag |
5866358 |
T |
|
| Q |
209 |
agttatacatatttccttatgggttattgggccaatgatgataatgttcgcaaagcgctacacatacagaaggtatatagtctatcaaagtatatatcaa |
308 |
Q |
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| T |
5866359 |
agttatacatatttccttatgggttattgggccaatgatgataatgttcgcaaagcgctacacatacagaaggtatatagtctatcaaagtatatatcaa |
5866458 |
T |
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| Q |
309 |
aattgtttccatgtatatatcaaaattataatttccccatgttgtctatcaaagtatacatctattgacacatgacaaaatttcacgcctctattttcca |
408 |
Q |
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| T |
5866459 |
aattgtttccatgtatatatcaaaattataatttccccgtgttgtctatcaaagtatacatctattgacacatgacaaaatttcacgcctctattttcca |
5866558 |
T |
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| Q |
409 |
ttaaaaattctccacattcgtgcgagattgcaaggagtctttactagttatgcagttataacataagaact |
479 |
Q |
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| T |
5866559 |
ttaaaaattctccacattcgtgcgagattgcaaggagtctttactagttatgcagttataacataagaact |
5866629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 170 - 286
Target Start/End: Original strand, 5859768 - 5859883
Alignment:
| Q |
170 |
ttttgttaacttgatattttgtttcctttccacccttagagttatacatatttccttatgggttattgggccaatgatgataatgttcgcaaagcgctac |
269 |
Q |
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||||||||||||||| ||| | ||||||||||| |||||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||| |||| |
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| T |
5859768 |
ttttgttaacttgatgttt-gcttcctttccacttttagagttattcatatttccttatgggtttctgggctaatgatgataatgttcgcaaagcactac |
5859866 |
T |
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| Q |
270 |
acatacagaaggtatat |
286 |
Q |
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|||||| ||||||||| |
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| T |
5859867 |
acatacgtaaggtatat |
5859883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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