View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6084_low_3 (Length: 438)
Name: NF6084_low_3
Description: NF6084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6084_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 430
Target Start/End: Complemental strand, 16899232 - 16898792
Alignment:
| Q |
1 |
agatctctttcggtttaatcatatgttctaggttttaaaccaaccctaaagatacaggggtgttaaatttcaaatgagagttttgtccttcattatcttc |
100 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16899232 |
agatctctttcagtttaatcatatgttctagattttaaaccaaccctaaaaatacaggggtgttaaatttcaaatgagagttttgtccttcattatcttc |
16899133 |
T |
|
| Q |
101 |
ttactcaactcgaagattagtctttttaactgcgcgcaaatcatatccgtctgaaaaaacaaaataattgaatatggtacgtaacaagattcccttccta |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||| || ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16899132 |
ttactcaactcgaagattagtctttgtaattgcgcgcagattatatcagtct-aaaaaacaaaataattgaatatggtacgtaacaagattcccttccta |
16899034 |
T |
|
| Q |
201 |
ttgaatgttg------------gttttgctgacttgcaatagataagtatgcagaatctaccttaagatctatctttctttgtttcttctagttctacaa |
288 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16899033 |
ttgaatgttgtcatccattttggttttgctgacttgcaatagataagtatgcagaatctaccttaagatctatctttctttgtttcttctagttctacaa |
16898934 |
T |
|
| Q |
289 |
cataaaaataaaacactctttcaacatcaaacaacattaaaataactttgcatgcactttagtttatattatagtacaaaacaatccacttaaccatgtt |
388 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16898933 |
cataaaaataaaataccttttcaacatcaaacaacattaaaataacattgcatgcactttagtttatattatagtacaaaacaatccacttaaccatgtt |
16898834 |
T |
|
| Q |
389 |
tttaactacaactaagtcttatatttcattacctttcatctc |
430 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
16898833 |
tttaactacaactaagtcttatatttcatcacctttcatctc |
16898792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 16901734 - 16901671
Alignment:
| Q |
363 |
tacaaaacaatccacttaaccatgtttttaactacaactaagtcttatatttcattacctttcat |
427 |
Q |
| |
|
||||| ||||||| ||||| |||||||| | | |||||||||||||||| ||||| ||||||||| |
|
|
| T |
16901734 |
tacaacacaatcc-cttaatcatgttttcatcaacaactaagtcttatacttcatcacctttcat |
16901671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University