View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6084_low_5 (Length: 332)
Name: NF6084_low_5
Description: NF6084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6084_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 321
Target Start/End: Complemental strand, 26102954 - 26102673
Alignment:
| Q |
19 |
actttaatggtagcctattgacatcatcatatctaaagggatggacggtgggagagagagtgggaggcggatgatgaacaaccattagcctgtggttttc |
118 |
Q |
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| T |
26102954 |
actttaatcgtagcctattgacatcatcatatctaaagggatggacggtgg---------------------gatgaacaaccattagcctgtggttttc |
26102876 |
T |
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| Q |
119 |
ttaatctaaattcaaaagtcttatacactactcttcagaatgagagaaaaggcatcatgcatgcggtttgttctgtatattgggaaccataccctatata |
218 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
26102875 |
ttaatctaaattcaaaagtcctatacactactcttcagaatgagagaaaaggcaacatgcatgcggtttgttctgtatattgcagaccataacctatata |
26102776 |
T |
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| Q |
219 |
cagagtttgtggccaatgtgaatttgaattatgtctacaaattttgacgataatcagatattattttatatgccaacgagttctatcaaaattaacgtcc |
318 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
26102775 |
cagagtttgtggccaatgtcaatttgaattatgtctacaaattttgacgataatcatatattattttatatgccaacgagttctatcaaaattaacatcc |
26102676 |
T |
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