View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6084_low_6 (Length: 327)
Name: NF6084_low_6
Description: NF6084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6084_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 13 - 204
Target Start/End: Complemental strand, 30947712 - 30947521
Alignment:
| Q |
13 |
aaaatcaagcgacgaacaacattgttgcaacaattgcaaactatgttgacactaaattgactttctcattaatattcattccgatacaatattaagaaca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30947712 |
aaaatcaagcgacgaacaacattgttgcaacaattgcaaactatgttgacactaaattgactttctcattaatattcattccgatacaatattaagaaca |
30947613 |
T |
|
| Q |
113 |
gtacagattggaacgaaattctaagaagatactcacgacggcagtgacatcgtgcaaggccggagtaatagttcattctccccttttctaaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
30947612 |
gtacagattggaacgaaattctaagaagatactcacgacggcagtgacatcgtgcaaggccggagtaatagttcattctcccctttcctaaa |
30947521 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 298
Target Start/End: Complemental strand, 30947509 - 30947459
Alignment:
| Q |
249 |
aaacacctcataggcagcacaataatacc-ttgctaaagaataatgaagaa |
298 |
Q |
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|||||||||| |||||| ||||||||||| ||||||||||||||||||||| |
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| T |
30947509 |
aaacacctcacaggcagaacaataatacccttgctaaagaataatgaagaa |
30947459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 195 - 295
Target Start/End: Original strand, 3367602 - 3367707
Alignment:
| Q |
195 |
cttttctaaataagcacacgattgcaaaacacagtcaaatttcagtgagt-----tatcaaacacctcataggcagcacaataataccttgctaaagaat |
289 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3367602 |
ctttcctaaataagcacacaattgcaaaacacagtcaaatttcattgagtcaaattatcaaacacctgataggcagcacaataataccttgctaaagaat |
3367701 |
T |
|
| Q |
290 |
aatgaa |
295 |
Q |
| |
|
|||||| |
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|
| T |
3367702 |
aatgaa |
3367707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 195 - 295
Target Start/End: Original strand, 54188514 - 54188619
Alignment:
| Q |
195 |
cttttctaaataagcacacgattgcaaaacacagtcaaatttcagtgagt-----tatcaaacacctcataggcagcacaataataccttgctaaagaat |
289 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||||||||||||| ||||| |||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
54188514 |
ctttcctaaataagcacacaattgcaaaacacagtcaaatttcattgagtcaaattatcgaacacctgataggcagcacaataataccttgctaaagaat |
54188613 |
T |
|
| Q |
290 |
aatgaa |
295 |
Q |
| |
|
|||||| |
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|
| T |
54188614 |
aatgaa |
54188619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 195 - 295
Target Start/End: Complemental strand, 8570664 - 8570559
Alignment:
| Q |
195 |
cttttctaaataagcacacgattgcaaaacacagtcaaatttcagtgagt-----tatcaaacacctcataggcagcacaataataccttgctaaagaat |
289 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| |||||||||||| || || |||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
8570664 |
ctttcctaaataagcacacaattgcaaaacatagtcaaatttcattgcgtcaaattatcgaacacctgataggcagcacaataataccttgctaaagaat |
8570565 |
T |
|
| Q |
290 |
aatgaa |
295 |
Q |
| |
|
|||||| |
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|
| T |
8570564 |
aatgaa |
8570559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 195 - 295
Target Start/End: Complemental strand, 28696624 - 28696519
Alignment:
| Q |
195 |
cttttctaaataagcacacgattgcaaaacacagtcaaatttcagtgagt-----tatcaaacacctcataggcagcacaataataccttgctaaagaat |
289 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| |||||||||||| || || |||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
28696624 |
ctttcctaaataagcacacaattgcaaaacatagtcaaatttcattgcgtcaaattatcgaacacctgataggcagcacaataataccttgctaaagaat |
28696525 |
T |
|
| Q |
290 |
aatgaa |
295 |
Q |
| |
|
|||||| |
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|
| T |
28696524 |
aatgaa |
28696519 |
T |
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