View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6084_low_7 (Length: 283)
Name: NF6084_low_7
Description: NF6084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6084_low_7 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-120; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 33976214 - 33975957
Alignment:
| Q |
12 |
atgaactgaggcttagaagttccaaattctccaattttccaatatcttggggaagtgaagaaagcttgtggcaattagtaacattgagcttctttaatga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33976214 |
atgaactgaggcttagaagttccaaattctccaattttccaatatcttggggaagtgaagaaagcttgtggcaattagtaacattgagcttctttaatga |
33976115 |
T |
|
| Q |
112 |
gataatatcacagataccagttggcaatcccaccaaatcgttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggctgcta |
211 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33976114 |
gataatatcacagataccagtttgcaataccaccaaatctttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggatgcta |
33976015 |
T |
|
| Q |
212 |
tccttttcaaaagccattcttgtattacacatgtagagagatagttttctcaaattct |
269 |
Q |
| |
|
||||||||||||||| | |||| ||||||||||| |||||||||||| ||||||||| |
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|
| T |
33976014 |
cccttttcaaaagccagtattgtgttacacatgtacagagatagttttttcaaattct |
33975957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 33993133 - 33992876
Alignment:
| Q |
12 |
atgaactgaggcttagaagttccaaattctccaattttccaatatcttggggaagtgaagaaagcttgtggcaattagtaacattgagcttctttaatga |
111 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993133 |
atgaactgaagcttagaagttccaaattctccaattttccaatatcttggggaagtgaagaaagcttgtggcaattagtaacattgagcttctttaatga |
33993034 |
T |
|
| Q |
112 |
gataatatcacagataccagttggcaatcccaccaaatcgttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggctgcta |
211 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
33993033 |
gataatatcacagataccagtttgcaataccaccaaatctttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggatgcta |
33992934 |
T |
|
| Q |
212 |
tccttttcaaaagccattcttgtattacacatgtagagagatagttttctcaaattct |
269 |
Q |
| |
|
||||||||||||||| | |||| |||||||||||||||||||||||| ||| ||||| |
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|
| T |
33992933 |
cccttttcaaaagccagtattgtgttacacatgtagagagatagttttttcagattct |
33992876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 33960919 - 33960662
Alignment:
| Q |
12 |
atgaactgaggcttagaagttccaaattctccaattttccaatatcttggggaagtgaagaaagcttgtggcaattagtaacattgagcttctttaatga |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
33960919 |
atgaactgaggcttagaagttccaaattctccaattttccaatatcttggggaagtgaaaaaagcttgtggcaattagtaacattgagcttctttagtga |
33960820 |
T |
|
| Q |
112 |
gataatatcacagataccagttggcaatcccaccaaatcgttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggctgcta |
211 |
Q |
| |
|
||| |||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||| |
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| T |
33960819 |
gatgatatcacagataccagttggaaataccaccaaatctttgcagtaatcaatgttcaattcttctaggtttgcaaatgcatctgaaattaggatgcta |
33960720 |
T |
|
| Q |
212 |
tccttttcaaaagccattcttgtattacacatgtagagagatagttttctcaaattct |
269 |
Q |
| |
|
||||||||||||||| | |||| |||||||||||||||||||||||| ||||||||| |
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| T |
33960719 |
cccttttcaaaagccagtattgtgttacacatgtagagagatagttttttcaaattct |
33960662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 269
Target Start/End: Complemental strand, 33953613 - 33953356
Alignment:
| Q |
12 |
atgaactgaggcttagaagttccaaattctccaattttccaatatcttggggaagtgaagaaagcttgtggcaattagtaacattgagcttctttaatga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | | |
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| T |
33953613 |
atgaactgaggcttagaagttccaaattctccaattttccaatatcttggggaagtgaagaaagcttgtggcaattagtaaccctgagcttctttagtaa |
33953514 |
T |
|
| Q |
112 |
gataatatcacagataccagttggcaatcccaccaaatcgttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggctgcta |
211 |
Q |
| |
|
|| ||||||||||||||| |||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
33953513 |
gaagatatcacagataccaattggtaataccaccaaatctttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggatgcta |
33953414 |
T |
|
| Q |
212 |
tccttttcaaaagccattcttgtattacacatgtagagagatagttttctcaaattct |
269 |
Q |
| |
|
||||||||||||||| | |||| |||||||||||||||||||||||| ||| ||||| |
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|
| T |
33953413 |
cccttttcaaaagccagtattgtgttacacatgtagagagatagttttttcagattct |
33953356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 29 - 259
Target Start/End: Complemental strand, 33914418 - 33914188
Alignment:
| Q |
29 |
agttccaaattctccaattttccaatatcttggggaagtgaagaaagcttgtggcaattagtaacattgagcttctttaatgagataatatcacagatac |
128 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||| || ||||||||||| ||||||||||||| | ||||||| ||||||||| ||| ||||| | | |
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|
| T |
33914418 |
agttccaaattcatcaactttccaatatcttggggcagcgaagaaagcttatggcaattagtaatactgagcttttttaatgaggcaatgtcacacaccc |
33914319 |
T |
|
| Q |
129 |
cagttggcaatcccaccaaatcgttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggctgctatccttttcaaaagccat |
228 |
Q |
| |
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|| | |||||| |||||| ||| ||| | ||||||||| |||| ||||||| ||| ||||| ||||||||||||| ||||| ||||||||||||| | |
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|
| T |
33914318 |
cattaggcaatgccaccatatccttggaataatcaatgctcaaatcttctaaattaggaaacaaatctgaaattaggatgctacccttttcaaaagctag |
33914219 |
T |
|
| Q |
229 |
tcttgtattacacatgtagagagatagtttt |
259 |
Q |
| |
|
||||||||||||||||||||| |||| |||| |
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|
| T |
33914218 |
tcttgtattacacatgtagagggataatttt |
33914188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 29 - 259
Target Start/End: Complemental strand, 33943135 - 33942905
Alignment:
| Q |
29 |
agttccaaattctccaattttccaatatcttggggaagtgaagaaagcttgtggcaattagtaacattgagcttctttaatgagataatatcacagatac |
128 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| || |||||||||| ||||||||||||| | ||||||| || || |||||||||||||| | | |
|
|
| T |
33943135 |
agttccaaattctccaactttccaatttcttggggcagcaaagaaagcttatggcaattagtaatactgagctttttcaacgagataatatcacacaccc |
33943036 |
T |
|
| Q |
129 |
cagttggcaatcccaccaaatcgttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggctgctatccttttcaaaagccat |
228 |
Q |
| |
|
|| | |||||| | || ||| ||||| ||||| ||| |||| ||||||| ||| |||||| || ||||||||| |||| ||||||||||||| | |
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|
| T |
33943035 |
cattaggcaatgctgtcatatccttgcaataatccatgctcaaatcttctaaattaggaaataagtcggaaattaggatgctgcccttttcaaaagcgag |
33942936 |
T |
|
| Q |
229 |
tcttgtattacacatgtagagagatagtttt |
259 |
Q |
| |
|
||||||||||||||||||||| |||| |||| |
|
|
| T |
33942935 |
tcttgtattacacatgtagagggataatttt |
33942905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 139; Significance: 9e-73; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 17 - 263
Target Start/End: Complemental strand, 13172 - 12926
Alignment:
| Q |
17 |
ctgaggcttagaagttccaaattctccaattttccaatatcttggggaagtgaagaaagcttgtggcaattagtaacattgagcttctttaatgagataa |
116 |
Q |
| |
|
||||| ||||||||||| |||| | ||||| ||| ||||||||||||||| |||||| |||||||||||||||||| | ||||||| ||||||||| | |
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|
| T |
13172 |
ctgagccttagaagttctaaatatttcaattctccgatatcttggggaagttcagaaagtttgtggcaattagtaacactaagcttctctaatgagatga |
13073 |
T |
|
| Q |
117 |
tatcacagataccagttggcaatcccaccaaatcgttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggctgctatcctt |
216 |
Q |
| |
|
||||||| |||||||| || |||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| |
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|
| T |
13072 |
tatcacatataccagtaggaaatctcaccatatctttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggacgctaccctt |
12973 |
T |
|
| Q |
217 |
ttcaaaagccattcttgtattacacatgtagagagatagttttctca |
263 |
Q |
| |
|
||| ||||||| |||||||||||||||||| || ||||||||||||| |
|
|
| T |
12972 |
ttcgaaagccagtcttgtattacacatgtaaagtgatagttttctca |
12926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 12 - 210
Target Start/End: Original strand, 8275814 - 8276012
Alignment:
| Q |
12 |
atgaactgaggcttagaagttccaaattctccaattttccaatatcttggggaagtgaagaaagcttgtggcaattagtaacattgagcttctttaatga |
111 |
Q |
| |
|
|||||| ||||||||||||||||||||| || ||||||||||||||||||| ||||||||||||||||||| |||||||| |||| |||||| ||| |
|
|
| T |
8275814 |
atgaaccgaggcttagaagttccaaatttgtaaactttccaatatcttggggaattgaagaaagcttgtggcaaatagtaacaccgagcatctttagtga |
8275913 |
T |
|
| Q |
112 |
gataatatcacagataccagttggcaatcccaccaaatcgttgcagtaatcaatgttcaattcttctagatttggaaatgcatctgaaattaggctgct |
210 |
Q |
| |
|
||| |||||||| |||| | |||||||| |||||||||| |||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||| |
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|
| T |
8275914 |
gatgatatcacatatactaattggcaataccaccaaatctttgcaggaatcaatgttcaattcttcaggatttggaaatgcatctgaaattaggatgct |
8276012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 8277341 - 8277403
Alignment:
| Q |
207 |
tgctatccttttcaaaagccattcttgtattacacatgtagagagatagttttctcaaattct |
269 |
Q |
| |
|
||||| || ||||||||| ||||||||||||||||||||||| ||||| |||||||| ||||| |
|
|
| T |
8277341 |
tgctacccatttcaaaagtcattcttgtattacacatgtagacagataattttctcagattct |
8277403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 110
Target Start/End: Original strand, 6736648 - 6736727
Alignment:
| Q |
31 |
ttccaaattctccaattttccaatatcttggggaagtgaagaaagcttgtggcaattagtaacattgagcttctttaatg |
110 |
Q |
| |
|
||||||||||||||| |||||||||||| | || | | ||||||||||||| ||||| || | | |||||||||| |||| |
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|
| T |
6736648 |
ttccaaattctccaactttccaatatctcgaggcattaaagaaagcttgtgacaatttgtgatactgagcttcttcaatg |
6736727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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