View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6085_high_4 (Length: 320)

Name: NF6085_high_4
Description: NF6085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6085_high_4
NF6085_high_4
[»] chr3 (10 HSPs)
chr3 (1-298)||(14338349-14338653)
chr3 (125-197)||(20503479-20503553)
chr3 (137-190)||(26492183-26492236)
chr3 (139-197)||(40993306-40993364)
chr3 (146-190)||(55401112-55401156)
chr3 (139-189)||(10954982-10955032)
chr3 (117-167)||(49179716-49179768)
chr3 (139-183)||(3865704-3865748)
chr3 (146-190)||(7171538-7171582)
chr3 (137-189)||(25093530-25093582)
[»] chr7 (14 HSPs)
chr7 (117-190)||(5937399-5937474)
chr7 (125-197)||(21880166-21880240)
chr7 (139-199)||(7197266-7197326)
chr7 (139-189)||(25956475-25956525)
chr7 (139-183)||(33994242-33994286)
chr7 (139-197)||(598238-598296)
chr7 (116-161)||(10702551-10702597)
chr7 (117-167)||(1885579-1885631)
chr7 (139-190)||(8234176-8234227)
chr7 (146-197)||(21864845-21864896)
chr7 (139-197)||(7973094-7973152)
chr7 (139-168)||(7438736-7438765)
chr7 (146-190)||(15680846-15680890)
chr7 (131-167)||(25822677-25822713)
[»] chr4 (17 HSPs)
chr4 (117-190)||(13307883-13307958)
chr4 (117-197)||(44362672-44362754)
chr4 (139-197)||(29205474-29205532)
chr4 (139-196)||(12797310-12797367)
chr4 (125-190)||(21945517-21945584)
chr4 (118-173)||(13117436-13117493)
chr4 (139-189)||(16073424-16073474)
chr4 (139-197)||(23292957-23293015)
chr4 (149-190)||(4157189-4157230)
chr4 (149-190)||(4157476-4157517)
chr4 (146-190)||(34306782-34306826)
chr4 (139-189)||(28964227-28964277)
chr4 (139-197)||(49431056-49431114)
chr4 (146-183)||(35157970-35158007)
chr4 (124-166)||(37496717-37496761)
chr4 (157-197)||(30982838-30982878)
chr4 (139-183)||(54580008-54580052)
[»] chr2 (15 HSPs)
chr2 (146-197)||(18840984-18841035)
chr2 (117-189)||(43585984-43586058)
chr2 (139-197)||(2438690-2438748)
chr2 (139-196)||(30404822-30404879)
chr2 (137-197)||(15972901-15972961)
chr2 (119-188)||(24067758-24067829)
chr2 (116-173)||(37491850-37491909)
chr2 (139-177)||(5040764-5040802)
chr2 (146-200)||(28596506-28596560)
chr2 (117-167)||(33884057-33884109)
chr2 (141-197)||(21091755-21091811)
chr2 (139-190)||(37559007-37559058)
chr2 (143-189)||(12224257-12224303)
chr2 (118-161)||(37211892-37211937)
chr2 (117-162)||(13501084-13501131)
[»] chr8 (16 HSPs)
chr8 (139-197)||(31557026-31557084)
chr8 (123-188)||(42874534-42874601)
chr8 (137-197)||(44462166-44462226)
chr8 (137-197)||(44469699-44469759)
chr8 (146-197)||(5813629-5813680)
chr8 (146-197)||(33405355-33405406)
chr8 (139-189)||(18407749-18407799)
chr8 (117-168)||(27733853-27733906)
chr8 (139-197)||(36450725-36450783)
chr8 (117-167)||(24295138-24295190)
chr8 (117-150)||(25104613-25104646)
chr8 (125-183)||(40332205-40332265)
chr8 (139-175)||(4948682-4948718)
chr8 (141-197)||(20679366-20679422)
chr8 (117-162)||(26915246-26915293)
chr8 (121-162)||(31119097-31119140)
[»] chr1 (11 HSPs)
chr1 (139-197)||(1815287-1815345)
chr1 (139-197)||(40258904-40258962)
chr1 (139-182)||(38078647-38078690)
chr1 (139-197)||(18190079-18190137)
chr1 (146-190)||(22515865-22515909)
chr1 (146-190)||(46348361-46348405)
chr1 (139-178)||(51410055-51410094)
chr1 (139-189)||(18337359-18337409)
chr1 (148-189)||(21530728-21530769)
chr1 (139-188)||(37598861-37598910)
chr1 (146-178)||(22881606-22881638)
[»] chr6 (19 HSPs)
chr6 (146-197)||(32978870-32978921)
chr6 (117-172)||(6751878-6751935)
chr6 (139-197)||(34595164-34595222)
chr6 (117-167)||(19369823-19369875)
chr6 (139-196)||(28152128-28152185)
chr6 (125-197)||(28715309-28715383)
chr6 (117-197)||(32225361-32225443)
chr6 (129-183)||(30851620-30851674)
chr6 (148-189)||(4877982-4878023)
chr6 (115-190)||(26402658-26402737)
chr6 (141-197)||(16833340-16833396)
chr6 (151-190)||(24645523-24645562)
chr6 (117-160)||(10031576-10031621)
chr6 (137-167)||(15489733-15489763)
chr6 (112-167)||(22745958-22746015)
chr6 (119-177)||(7377987-7378047)
chr6 (139-188)||(7977810-7977859)
chr6 (139-188)||(27904016-27904065)
chr6 (157-189)||(18367895-18367927)
[»] scaffold0083 (1 HSPs)
scaffold0083 (139-190)||(45508-45559)
[»] chr5 (15 HSPs)
chr5 (146-197)||(42893397-42893448)
chr5 (117-162)||(15302531-15302576)
chr5 (116-166)||(30080503-30080555)
chr5 (137-173)||(19167571-19167607)
chr5 (139-178)||(15884018-15884057)
chr5 (125-197)||(27932249-27932323)
chr5 (125-197)||(28588645-28588719)
chr5 (125-189)||(30502367-30502433)
chr5 (125-189)||(30542710-30542776)
chr5 (139-197)||(21191027-21191085)
chr5 (139-189)||(21576724-21576774)
chr5 (139-196)||(23012380-23012437)
chr5 (139-167)||(8420057-8420085)
chr5 (120-173)||(16207586-16207641)
chr5 (139-183)||(42029782-42029826)
[»] scaffold0652 (1 HSPs)
scaffold0652 (139-197)||(433-491)
[»] scaffold0314 (1 HSPs)
scaffold0314 (117-168)||(8954-9007)
[»] scaffold0050 (1 HSPs)
scaffold0050 (139-196)||(70308-70365)
[»] scaffold0053 (1 HSPs)
scaffold0053 (146-190)||(8835-8879)
[»] scaffold0512 (1 HSPs)
scaffold0512 (146-188)||(5016-5058)
[»] scaffold0697 (1 HSPs)
scaffold0697 (148-189)||(1683-1724)


Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 14338653 - 14338349
Alignment:
Q  1 gaacctttgaaggtattgtacaaacaaggacagaacccagaactgattgcccaggttagttgctcatttctttgaagcacgaacacacacacggacacc- 99  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||     
T  14338653 gaacctttgaaggtattgtacaaataaggacagaacccagaactgattgcccaggttagttgctcacttctttgaagcacgaacacatacacggacaccg 14338554  T
Q  100 gataacgacacagacatgataaaattttgagaaaatgac--aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    || |  |||||||||| ||||||||||||| ||||||||  ||||||||||||| |||| ||||||||||||||||||||| | ||||||||| ||||||    
T  14338553 gacacagacacagacacgataaaattttgaaaaaatgacataattcaatgtaatcacaaatgtcggtgtcagacacgacacgtatcggacaccgggacac 14338454  T
Q  198 tccaaaagttttgcttcaacaa----ttaagggctctgtttggtaaggccatcagctagcttattagctatccgctataaactataaggtagcttatcaa 293  Q
    |||||||||||| |||||||||    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||    
T  14338453 tccaaaagttttccttcaacaaacagttaagggctctgtttggtaaggccatcagctagcttatcagctatccgctataagctatcaggtagcttatcaa 14338354  T
Q  294 ctatc 298  Q
     ||||    
T  14338353 ttatc 14338349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 20503479 - 20503553
Alignment:
Q  125 tttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    ||||| |||||||||  ||||| |||||||||||||||||||||  ||||||||||||||| |||||| ||||||    
T  20503479 tttgaaaaaatgacataattcagtgtaattacaagtgtcggtgttggacacgacacatgtctgacaccgggacac 20503553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 190
Target Start/End: Complemental strand, 26492236 - 26492183
Alignment:
Q  137 acaattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacc 190  Q
    |||||||| ||||||||||||| |||||||| ||||||||||||||| ||||||    
T  26492236 acaattcagtgtaattacaagtatcggtgtcggacacgacacatgtctgacacc 26492183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 40993364 - 40993306
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||||| |||||||| | ||||||||||| ||||||||||||||| |||||| ||||||    
T  40993364 aattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacaccgggacac 40993306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 55401112 - 55401156
Alignment:
Q  146 tgtaattacaagtgtcggtgtcagacacgacacatgtcggacacc 190  Q
    |||||||||||||||||||||| |||||||||| |||| ||||||    
T  55401112 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgacacc 55401156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 10954982 - 10955032
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacac 189  Q
    |||||| |||||| ||||||||||||||| |||||||||| |||| |||||    
T  10954982 aattcagtgtaatcacaagtgtcggtgtcggacacgacacgtgtccgacac 10955032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 49179768 - 49179716
Alignment:
Q  117 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtc 167  Q
    ||||||||||||||||| |||||  |||| ||||||| |||||||||||||||    
T  49179768 gataaaattttgagaaagtgacataattcgatgtaatcacaagtgtcggtgtc 49179716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 3865704 - 3865748
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtc 183  Q
    |||||| | |||||||||||||||||||| |||||||||| ||||    
T  3865704 aattcagtataattacaagtgtcggtgtctgacacgacacgtgtc 3865748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 7171538 - 7171582
Alignment:
Q  146 tgtaattacaagtgtcggtgtcagacacgacacatgtcggacacc 190  Q
    ||||||||||||||| |||||| |||||||||| |||| ||||||    
T  7171538 tgtaattacaagtgttggtgtcggacacgacacgtgtccgacacc 7171582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 25093530 - 25093582
Alignment:
Q  137 acaattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacac 189  Q
    |||||||| |||||||| | ||||||||||| ||||| ||||||||| |||||    
T  25093530 acaattcagtgtaattatatgtgtcggtgtcggacacaacacatgtccgacac 25093582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 5937474 - 5937399
Alignment:
Q  117 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacc 190  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||| ||||| | ||||| ||||||||||||||    
T  5937474 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgtctgtgtcggtcacgatacatgtcggacacc 5937399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 21880166 - 21880240
Alignment:
Q  125 tttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    ||||||||||| |||  ||||| |||||||||||||||||||||| ||||||||||||||| |||||| ||||||    
T  21880166 tttgagaaaattacataattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccaggacac 21880240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 139 - 199
Target Start/End: Complemental strand, 7197326 - 7197266
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacactc 199  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||| |||||| ||| ||||    
T  7197326 aattcaatgtaattacaagtgtcggtgtcggacacaacacatgtccgacaccgggatactc 7197266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 25956475 - 25956525
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacac 189  Q
    ||||||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  25956475 aattcaatgtaatcacaagtgtcggtgtcggacacgatacatgtcggacac 25956525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 33994242 - 33994286
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtc 183  Q
    |||||| || |||||||||||||||||||||||||||||||||||    
T  33994242 aattcagtgcaattacaagtgtcggtgtcagacacgacacatgtc 33994286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 598238 - 598296
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||| |||||||||  |||||||||||||||||||||||| |||| |||||| ||||||    
T  598238 aattaaatgtaattgtaagtgtcggtgtcagacacgacacgtgtccgacaccgggacac 598296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 10702597 - 10702551
Alignment:
Q  116 tgataaaattttgagaaaatgaca-attcaatgtaattacaagtgtc 161  Q
    |||||||||||||||||||||||| |||||||||||||| |||||||    
T  10702597 tgataaaattttgagaaaatgacatattcaatgtaattataagtgtc 10702551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 1885579 - 1885631
Alignment:
Q  117 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtc 167  Q
    ||||||||||||| |||||||||  |||||||||||| |||||||||||||||    
T  1885579 gataaaattttgaaaaaatgacataattcaatgtaatcacaagtgtcggtgtc 1885631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 8234176 - 8234227
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacc 190  Q
    |||||| |||| ||||||||| ||||||| ||||||||||||||| ||||||    
T  8234176 aattcagtgtagttacaagtgccggtgtcggacacgacacatgtccgacacc 8234227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 21864845 - 21864896
Alignment:
Q  146 tgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    ||||||||||||||||| |||| |||||||||| |||| |||||| ||||||    
T  21864845 tgtaattacaagtgtcgctgtcggacacgacacgtgtccgacaccgggacac 21864896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 7973152 - 7973094
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||| ||||||||||||| ||| ||||| |||||||||||||||| |||| | ||||||    
T  7973152 aatttaatgtaattacaaatgttggtgtgagacacgacacatgtccgacatcgggacac 7973094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 168
Target Start/End: Original strand, 7438736 - 7438765
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtca 168  Q
    ||||||||||||||||||||||||||||||    
T  7438736 aattcaatgtaattacaagtgtcggtgtca 7438765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 15680846 - 15680890
Alignment:
Q  146 tgtaattacaagtgtcggtgtcagacacgacacatgtcggacacc 190  Q
    |||||||| ||||||||||||| |||||||||| |||| ||||||    
T  15680846 tgtaattataagtgtcggtgtcggacacgacacgtgtccgacacc 15680890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 167
Target Start/End: Original strand, 25822677 - 25822713
Alignment:
Q  131 aaaatgacaattcaatgtaattacaagtgtcggtgtc 167  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  25822677 aaaatcacaattcagtgtaattacaagtgtcggtgtc 25822713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 13307883 - 13307958
Alignment:
Q  117 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacc 190  Q
    |||||||||||||||||||||||  |||||||||||| |||||||| |||||| |||||||||| |||| ||||||    
T  13307883 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgttggtgtcggacacgacacgtgtcagacacc 13307958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 117 - 197
Target Start/End: Original strand, 44362672 - 44362754
Alignment:
Q  117 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||||||||||||||||||||||  ||| |||||||| |||||||| ||||||||||||||||| | ||||||| | ||||||    
T  44362672 gataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacacgacacgtatcggacatcgggacac 44362754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 29205474 - 29205532
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||||| |||||||||||||||||||||  ||||||||||||||| |||||| ||||||    
T  29205474 aattcagtgtaattacaagtgtcggtgttggacacgacacatgtccgacaccgggacac 29205532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 12797367 - 12797310
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggaca 196  Q
    |||||| |||||||||||||||||||||| ||||||| ||||||| |||||| |||||    
T  12797367 aattcagtgtaattacaagtgtcggtgtcggacacgatacatgtctgacaccgggaca 12797310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 190
Target Start/End: Original strand, 21945517 - 21945584
Alignment:
Q  125 tttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacc 190  Q
    ||||| |||||||||  ||||| |||||||||||||||||||||| |||| |||||||||| ||||||    
T  21945517 tttgaaaaaatgacataattcagtgtaattacaagtgtcggtgtcggacatgacacatgtccgacacc 21945584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 118 - 173
Target Start/End: Original strand, 13117436 - 13117493
Alignment:
Q  118 ataaaattttgagaaaatgacaa--ttcaatgtaattacaagtgtcggtgtcagacac 173  Q
    ||||||||| |||||||||||||  ||||||||||| ||||||||||||||| |||||    
T  13117436 ataaaatttggagaaaatgacaaaattcaatgtaatcacaagtgtcggtgtcggacac 13117493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 16073424 - 16073474
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacac 189  Q
    |||||| |||||||||||||||||||||| ||||||| ||||||| |||||    
T  16073424 aattcagtgtaattacaagtgtcggtgtcggacacgatacatgtccgacac 16073474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 23293015 - 23292957
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||||| | |||||||||||||||||||| |||||||||| |||| |||||| ||||||    
T  23293015 aattcagtataattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacac 23292957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 4157189 - 4157230
Alignment:
Q  149 aattacaagtgtcggtgtcagacacgacacatgtcggacacc 190  Q
    ||||||||||||||||||| ||||||||||||||| ||||||    
T  4157189 aattacaagtgtcggtgtcggacacgacacatgtccgacacc 4157230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 4157476 - 4157517
Alignment:
Q  149 aattacaagtgtcggtgtcagacacgacacatgtcggacacc 190  Q
    ||||||||||||||||||| ||||||||||||||| ||||||    
T  4157476 aattacaagtgtcggtgtcggacacgacacatgtccgacacc 4157517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 34306826 - 34306782
Alignment:
Q  146 tgtaattacaagtgtcggtgtcagacacgacacatgtcggacacc 190  Q
    |||||||||||||||||||||| |||||||||| |||| ||||||    
T  34306826 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgacacc 34306782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 28964277 - 28964227
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacac 189  Q
    |||||| |||||||||||||||| ||||| |||||||||||| || |||||    
T  28964277 aattcagtgtaattacaagtgtctgtgtcggacacgacacatatccgacac 28964227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 49431056 - 49431114
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||||| |||||||| ||||||||||||| |||||||||| ||||  ||||| ||||||    
T  49431056 aattcagtgtaattaaaagtgtcggtgtcggacacgacacgtgtccaacaccgggacac 49431114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 183
Target Start/End: Complemental strand, 35158007 - 35157970
Alignment:
Q  146 tgtaattacaagtgtcggtgtcagacacgacacatgtc 183  Q
    |||||||| ||||||||||||| |||||||||||||||    
T  35158007 tgtaattataagtgtcggtgtctgacacgacacatgtc 35157970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 166
Target Start/End: Original strand, 37496717 - 37496761
Alignment:
Q  124 ttttgagaaaatgaca--attcaatgtaattacaagtgtcggtgt 166  Q
    ||||||||||||||||  |||||||||||| ||||||||||||||    
T  37496717 ttttgagaaaatgacataattcaatgtaatcacaagtgtcggtgt 37496761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 197
Target Start/End: Complemental strand, 30982878 - 30982838
Alignment:
Q  157 gtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||||||||||||||||||||| |||| |||||| ||||||    
T  30982878 gtgtcggtgtcagacacgacacgtgtccgacaccgggacac 30982838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 54580052 - 54580008
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtc 183  Q
    |||||| |||||||| ||||||||||||| |||||||||| ||||    
T  54580052 aattcagtgtaattataagtgtcggtgtcggacacgacacgtgtc 54580008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 18841035 - 18840984
Alignment:
Q  146 tgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||    
T  18841035 tgtaattacaagtgtcggtgtcagacacgacacatgtccgacaccgggacac 18840984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 117 - 189
Target Start/End: Complemental strand, 43586058 - 43585984
Alignment:
Q  117 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacac 189  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||||||||| ||||||| || |||| |||||    
T  43586058 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcggacacgatacgtgtcagacac 43585984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 2438748 - 2438690
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||||| |||||||||||||||||||||| ||||||||||||||| |||||| ||||||    
T  2438748 aattcagtgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacac 2438690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 30404879 - 30404822
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggaca 196  Q
    |||||| |||||||||||||||||| ||| ||||||||||||||| |||||| |||||    
T  30404879 aattcagtgtaattacaagtgtcggcgtcggacacgacacatgtccgacaccaggaca 30404822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 15972901 - 15972961
Alignment:
Q  137 acaattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||||||| |||||||||||||||||||||| |||||||||| |||| ||| || ||||||    
T  15972901 acaattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacgccgggacac 15972961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 119 - 188
Target Start/End: Original strand, 24067758 - 24067829
Alignment:
Q  119 taaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggaca 188  Q
    |||||||||||||||||| ||  ||| |||| ||| |||||||||||||||||||||||||| |||| ||||    
T  24067758 taaaattttgagaaaatgtcataattaaatgaaatcacaagtgtcggtgtcagacacgacacgtgtcagaca 24067829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 37491909 - 37491850
Alignment:
Q  116 tgataaaattttgagaaaatgac--aattcaatgtaattacaagtgtcggtgtcagacac 173  Q
    |||||||||||||||||||| ||  ||||||||||||||| | |||||||||||||||||    
T  37491909 tgataaaattttgagaaaataacttaattcaatgtaattaaatgtgtcggtgtcagacac 37491850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 5040764 - 5040802
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgaca 177  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  5040764 aattcaatgtaattacaagtgtcggtgtcggacacgaca 5040802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 28596506 - 28596560
Alignment:
Q  146 tgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacactcc 200  Q
    |||||||| ||||||||||||| |||||||||| |||| ||||| ||||||||||    
T  28596506 tgtaattataagtgtcggtgtcggacacgacacgtgtccgacactcggacactcc 28596560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 33884057 - 33884109
Alignment:
Q  117 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtc 167  Q
    ||||||||| |||||||||||||  ||||| ||||||||||||||||||||||    
T  33884057 gataaaattgtgagaaaatgacatgattcagtgtaattacaagtgtcggtgtc 33884109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 21091755 - 21091811
Alignment:
Q  141 ttcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||| |||||||||||||||| |||||||||| | ||| ||||||||||| ||||||    
T  21091755 ttcagtgtaattacaagtgtcagtgtcagacaagccacctgtcggacaccgggacac 21091811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 37559007 - 37559058
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacc 190  Q
    ||||||||||||||||||||||||||||| |||  ||||| |||| ||||||    
T  37559007 aattcaatgtaattacaagtgtcggtgtcggacttgacacgtgtccgacacc 37559058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 143 - 189
Target Start/End: Original strand, 12224257 - 12224303
Alignment:
Q  143 caatgtaattacaagtgtcggtgtcagacacgacacatgtcggacac 189  Q
    ||||||||||||||||||||||||| ||||||| || |||| |||||    
T  12224257 caatgtaattacaagtgtcggtgtcggacacgatacgtgtccgacac 12224303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 161
Target Start/End: Complemental strand, 37211937 - 37211892
Alignment:
Q  118 ataaaattttgagaaaatgaca--attcaatgtaattacaagtgtc 161  Q
    ||||||||| ||||||||||||  ||||||||||||||||||||||    
T  37211937 ataaaatttcgagaaaatgacacaattcaatgtaattacaagtgtc 37211892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 13501131 - 13501084
Alignment:
Q  117 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcg 162  Q
    ||||||||||| |||||||||||  |||||||||||| ||||||||||    
T  13501131 gataaaattttaagaaaatgacataattcaatgtaatcacaagtgtcg 13501084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 31557026 - 31557084
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||||| ||||||||||||| |||||||||||||||||||||||| |||||| ||||||    
T  31557026 aattcagtgtaattacaagtttcggtgtcagacacgacacatgtccgacaccaggacac 31557084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 188
Target Start/End: Original strand, 42874534 - 42874601
Alignment:
Q  123 attttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggaca 188  Q
    |||||||||||||||||  |||||||||||| ||||||||| ||||  ||||| ||||||||||||||    
T  42874534 attttgagaaaatgacataattcaatgtaatcacaagtgtcagtgttggacacaacacatgtcggaca 42874601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 44462226 - 44462166
Alignment:
Q  137 acaattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||||||||| |||| | | ||||||||||||||||||| ||||||| |||||| ||||||    
T  44462226 acaattcaatttaatcatatgtgtcggtgtcagacacgatacatgtccgacaccgggacac 44462166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 197
Target Start/End: Complemental strand, 44469759 - 44469699
Alignment:
Q  137 acaattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||||||||| |||| | | ||||||||||||||||||| ||||||| |||||| ||||||    
T  44469759 acaattcaatttaatcatatgtgtcggtgtcagacacgatacatgtccgacaccgggacac 44469699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 5813629 - 5813680
Alignment:
Q  146 tgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    ||||| |||||||||||||||| |||||||||| |||| |||||| ||||||    
T  5813629 tgtaaatacaagtgtcggtgtcggacacgacacgtgtccgacaccgggacac 5813680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 33405406 - 33405355
Alignment:
Q  146 tgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||||||| | ||||||||||| ||||||||||||||| |||||| ||||||    
T  33405406 tgtaattatatgtgtcggtgtcggacacgacacatgtctgacacctggacac 33405355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 18407749 - 18407799
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacac 189  Q
    |||||| ||||||||||||||||| || | ||||||||||||||| |||||    
T  18407749 aattcagtgtaattacaagtgtcgctgccggacacgacacatgtccgacac 18407799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 27733853 - 27733906
Alignment:
Q  117 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtca 168  Q
    ||||||||||||||||||||| |  |||||||||||| |||||||| |||||||    
T  27733853 gataaaattttgagaaaatgatataattcaatgtaatcacaagtgttggtgtca 27733906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 36450783 - 36450725
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||||| ||||||||||||||| |||||| |||||||| | |||| |||||| ||||||    
T  36450783 aattcagtgtaattacaagtgtaggtgtcggacacgacgcgtgtccgacaccaggacac 36450725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 167
Target Start/End: Complemental strand, 24295190 - 24295138
Alignment:
Q  117 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtc 167  Q
    ||||||||| |||||||||||||  ||| |||||||| |||||||||||||||    
T  24295190 gataaaattgtgagaaaatgacacaatttaatgtaatcacaagtgtcggtgtc 24295138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 150
Target Start/End: Complemental strand, 25104646 - 25104613
Alignment:
Q  117 gataaaattttgagaaaatgacaattcaatgtaa 150  Q
    ||||||||||||| ||||||||||||||||||||    
T  25104646 gataaaattttgacaaaatgacaattcaatgtaa 25104613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 40332205 - 40332265
Alignment:
Q  125 tttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacacgacacatgtc 183  Q
    ||||||||||| |||  ||||| |||||||||||||||||||||  |||||||||| ||||    
T  40332205 tttgagaaaatcacataattcagtgtaattacaagtgtcggtgtgggacacgacacgtgtc 40332265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 175
Target Start/End: Original strand, 4948682 - 4948718
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacga 175  Q
    |||||| |||||||||||||||||||||| |||||||    
T  4948682 aattcagtgtaattacaagtgtcggtgtcggacacga 4948718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 197
Target Start/End: Complemental strand, 20679422 - 20679366
Alignment:
Q  141 ttcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||| |||||||| ||||||||||||||||| | |||| |||| |||||| ||||||    
T  20679422 ttcagtgtaattataagtgtcggtgtcagacgcaacacgtgtccgacaccgggacac 20679366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 162
Target Start/End: Complemental strand, 26915293 - 26915246
Alignment:
Q  117 gataaaattttgagaaaatgac--aattcaatgtaattacaagtgtcg 162  Q
    ||||||||||||||||||||||  |||| |||||||| ||||||||||    
T  26915293 gataaaattttgagaaaatgacataatttaatgtaatcacaagtgtcg 26915246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 31119097 - 31119140
Alignment:
Q  121 aaattttgagaaaatgaca--attcaatgtaattacaagtgtcg 162  Q
    |||||||||||||||||||  |||||||||||| ||||||||||    
T  31119097 aaattttgagaaaatgacataattcaatgtaatcacaagtgtcg 31119140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 1815287 - 1815345
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||||| |||||||||||||||||||||| ||||||||||||||| |||||| ||||||    
T  1815287 aattcagtgtaattacaagtgtcggtgtccgacacgacacatgtccgacaccgggacac 1815345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 40258962 - 40258904
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||||| ||||||||||||||||||||||||||||||||| |||| |||||| ||||||    
T  40258962 aattcagtgtaattacaagtgtcggtgtcagacacgacacctgtccgacaccaggacac 40258904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 182
Target Start/End: Complemental strand, 38078690 - 38078647
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgt 182  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  38078690 aattcaatgtaattacaagtgtcggtgtcggacacgacacatgt 38078647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 18190137 - 18190079
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||||| ||||||||||||||||| |||||||||| |||| |||| |||||| ||||||    
T  18190137 aattcagtgtaattacaagtgtcgatgtcagacacaacacgtgtccgacaccgggacac 18190079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 22515909 - 22515865
Alignment:
Q  146 tgtaattacaagtgtcggtgtcagacacgacacatgtcggacacc 190  Q
    |||||||||||||||||||||| |||||||||||| || ||||||    
T  22515909 tgtaattacaagtgtcggtgtcggacacgacacatatccgacacc 22515865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Complemental strand, 46348405 - 46348361
Alignment:
Q  146 tgtaattacaagtgtcggtgtcagacacgacacatgtcggacacc 190  Q
    |||||||||||||||||||||| |||||||||| |||| ||||||    
T  46348405 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgacacc 46348361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 51410055 - 51410094
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacac 178  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  51410055 aattcagtgtaattacaagtgtcggtgtcggacacgacac 51410094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 189
Target Start/End: Original strand, 18337359 - 18337409
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacac 189  Q
    |||||| |||||||||||||||||||||| ||||| |||| |||| |||||    
T  18337359 aattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgacac 18337409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 21530728 - 21530769
Alignment:
Q  148 taattacaagtgtcggtgtcagacacgacacatgtcggacac 189  Q
    |||||| ||||||||||||| ||||||||||||||| |||||    
T  21530728 taattataagtgtcggtgtcggacacgacacatgtccgacac 21530769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Original strand, 37598861 - 37598910
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggaca 188  Q
    |||||| |||||||| ||||||||||||| |||||||||| |||| ||||    
T  37598861 aattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgaca 37598910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 22881638 - 22881606
Alignment:
Q  146 tgtaattacaagtgtcggtgtcagacacgacac 178  Q
    |||||||||||||||||||||| ||||||||||    
T  22881638 tgtaattacaagtgtcggtgtcggacacgacac 22881606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 32978921 - 32978870
Alignment:
Q  146 tgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||||||||||||||||||||| ||||||||||||||| |||||| ||||||    
T  32978921 tgtaattacaagtgtcggtgtcggacacgacacatgtccgacaccgggacac 32978870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 6751935 - 6751878
Alignment:
Q  117 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagaca 172  Q
    |||||||||||||||||||||||  |||||||||||| ||||||||||||||| ||||    
T  6751935 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcggaca 6751878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 139 - 197
Target Start/End: Original strand, 34595164 - 34595222
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||||| |||||||||||||||||||||| |||||||||| |||| |||||| ||||||    
T  34595164 aattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtctgacaccgggacac 34595222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 167
Target Start/End: Original strand, 19369823 - 19369875
Alignment:
Q  117 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtc 167  Q
    |||||||||||||||||||||||  |||||||||||| |||||||||||||||    
T  19369823 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtc 19369875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 28152128 - 28152185
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggaca 196  Q
    |||||| |||||||||||||||||||||| |||||||||| |||| |||||| |||||    
T  28152128 aattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtccgacaccgggaca 28152185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 28715309 - 28715383
Alignment:
Q  125 tttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    ||||| |||||||||  ||||| |||||||||||||||||||||| |||||||||| |||  |||||| ||||||    
T  28715309 tttgaaaaaatgacataattcagtgtaattacaagtgtcggtgtcggacacgacacgtgttcgacaccgggacac 28715383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 197
Target Start/End: Complemental strand, 32225443 - 32225361
Alignment:
Q  117 gataaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    ||||||||||||||||||| ||   | |||||||||| ||| ||||||||||| |||||||| | ||||||||||| ||||||    
T  32225443 gataaaattttgagaaaataacgtgagtcaatgtaatcacaggtgtcggtgtcggacacgacccctgtcggacacctggacac 32225361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 30851620 - 30851674
Alignment:
Q  129 agaaaatgacaattcaatgtaattacaagtgtcggtgtcagacacgacacatgtc 183  Q
    ||||||| ||||||||||||||||| | ||||||||||| |||||||||| ||||    
T  30851620 agaaaatcacaattcaatgtaattatatgtgtcggtgtcggacacgacacgtgtc 30851674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 4877982 - 4878023
Alignment:
Q  148 taattacaagtgtcggtgtcagacacgacacatgtcggacac 189  Q
    |||||||||||||||||||| ||||||||||||||| |||||    
T  4877982 taattacaagtgtcggtgtcggacacgacacatgtccgacac 4878023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 115 - 190
Target Start/End: Complemental strand, 26402737 - 26402658
Alignment:
Q  115 atgataaaattttgagaaaa--tgaca--attcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacc 190  Q
    ||||||||||||||| ||||  |||||  ||||| |||||| ||||||||||||||| ||||||| |||||| |||||||    
T  26402737 atgataaaattttgaaaaaaaatgacataattcagtgtaatcacaagtgtcggtgtcggacacgatacatgttggacacc 26402658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 197
Target Start/End: Original strand, 16833340 - 16833396
Alignment:
Q  141 ttcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||| ||||||||||||||||||||| |||||||||||  ||| |||||| ||||||    
T  16833340 ttcagtgtaattacaagtgtcggtgttagacacgacacgcgtccgacaccaggacac 16833396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 151 - 190
Target Start/End: Original strand, 24645523 - 24645562
Alignment:
Q  151 ttacaagtgtcggtgtcagacacgacacatgtcggacacc 190  Q
    |||||||||||||||||||||||||||| |||| ||||||    
T  24645523 ttacaagtgtcggtgtcagacacgacacgtgtccgacacc 24645562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 160
Target Start/End: Original strand, 10031576 - 10031621
Alignment:
Q  117 gataaaattttgagaaaatgac--aattcaatgtaattacaagtgt 160  Q
    ||||||||||||||||||||||  ||||||||||||| ||||||||    
T  10031576 gataaaattttgagaaaatgacataattcaatgtaatcacaagtgt 10031621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 167
Target Start/End: Complemental strand, 15489763 - 15489733
Alignment:
Q  137 acaattcaatgtaattacaagtgtcggtgtc 167  Q
    |||||||||||||||||||||||||||||||    
T  15489763 acaattcaatgtaattacaagtgtcggtgtc 15489733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 22745958 - 22746015
Alignment:
Q  112 gacatgataaaattttgagaaaatg--acaattcaatgtaattacaagtgtcggtgtc 167  Q
    |||| ||||||||||||||||||||  | | ||||||||||| |||||||||||||||    
T  22745958 gacacgataaaattttgagaaaatgttatatttcaatgtaatcacaagtgtcggtgtc 22746015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 7377987 - 7378047
Alignment:
Q  119 taaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacacgaca 177  Q
    ||||| ||||||||||| |||  |||||||||||||| | ||||||||||| |||||||||    
T  7377987 taaaaatttgagaaaatcacataattcaatgtaattatatgtgtcggtgtcggacacgaca 7378047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 7977859 - 7977810
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggaca 188  Q
    |||||| |||||||||||||||||||||| ||||| ||| ||||| ||||    
T  7977859 aattcagtgtaattacaagtgtcggtgtcggacacaacatatgtccgaca 7977810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 188
Target Start/End: Complemental strand, 27904065 - 27904016
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggaca 188  Q
    |||||| ||||||||||| |||||||||||||||||| ||| ||| ||||    
T  27904065 aattcagtgtaattacaaatgtcggtgtcagacacgagacaagtctgaca 27904016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 157 - 189
Target Start/End: Original strand, 18367895 - 18367927
Alignment:
Q  157 gtgtcggtgtcagacacgacacatgtcggacac 189  Q
    ||||||||||||||||||||||||||| |||||    
T  18367895 gtgtcggtgtcagacacgacacatgtctgacac 18367927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 45559 - 45508
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacc 190  Q
    |||||| |||||||||||||||||||||| |||||||||| |||| ||||||    
T  45559 aattcagtgtaattacaagtgtcggtgtcggacacgacacgtgtctgacacc 45508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 197
Target Start/End: Original strand, 42893397 - 42893448
Alignment:
Q  146 tgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||||||||||||||||||||||||||| |||| |||| |||||| ||||||    
T  42893397 tgtaattacaagtgtcggtgtcagacacaacacgtgtccgacaccaggacac 42893448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 15302531 - 15302576
Alignment:
Q  117 gataaaattttgagaaaatgacaattcaatgtaattacaagtgtcg 162  Q
    ||||||||||||| ||||||||||||||| ||||| ||||||||||    
T  15302531 gataaaattttgaaaaaatgacaattcaaggtaatcacaagtgtcg 15302576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 116 - 166
Target Start/End: Complemental strand, 30080555 - 30080503
Alignment:
Q  116 tgataaaattttgagaaaatgac--aattcaatgtaattacaagtgtcggtgt 166  Q
    |||||||||||||||||||||||  ||||||||||||| |||||| |||||||    
T  30080555 tgataaaattttgagaaaatgacataattcaatgtaatcacaagtatcggtgt 30080503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 19167607 - 19167571
Alignment:
Q  137 acaattcaatgtaattacaagtgtcggtgtcagacac 173  Q
    ||||||||||||||| |||||||||||||||||||||    
T  19167607 acaattcaatgtaatcacaagtgtcggtgtcagacac 19167571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 139 - 178
Target Start/End: Original strand, 15884018 - 15884057
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacac 178  Q
    |||||| |||||||||||||||||||||| ||||||||||    
T  15884018 aattcagtgtaattacaagtgtcggtgtcggacacgacac 15884057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 197
Target Start/End: Original strand, 27932249 - 27932323
Alignment:
Q  125 tttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    ||||||||||| |||  ||||| ||||||||||| | | |||||| |||||||||| ||||||||||| ||||||    
T  27932249 tttgagaaaattacataattcagtgtaattacaaatcttggtgtcggacacgacacgtgtcggacaccaggacac 27932323  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 28588719 - 28588645
Alignment:
Q  125 tttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    ||||||||||| |||  ||||| |||||||| | ||||||||||| |||||||||||| || |||||| ||||||    
T  28588719 tttgagaaaatcacataattcagtgtaattataggtgtcggtgtcggacacgacacatatctgacaccaggacac 28588645  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 30502433 - 30502367
Alignment:
Q  125 tttgagaaaatgac--aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacac 189  Q
    ||||||||||| ||  |||||| |||||||| | ||||||||||| ||||||||||||||| |||||    
T  30502433 tttgagaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacac 30502367  T

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Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 30542776 - 30542710
Alignment:
Q  125 tttgagaaaatgac--aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacac 189  Q
    ||||||||||| ||  |||||| |||||||| | ||||||||||| ||||||||||||||| |||||    
T  30542776 tttgagaaaatcacttaattcagtgtaattatatgtgtcggtgtcggacacgacacatgtccgacac 30542710  T

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Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 21191085 - 21191027
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||||| |||||||||||||||||||||| ||||| |||| |||| ||| || ||||||    
T  21191085 aattcagtgtaattacaagtgtcggtgtcggacacaacacgtgtccgactccgggacac 21191027  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 139 - 189
Target Start/End: Complemental strand, 21576774 - 21576724
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacac 189  Q
    |||||| ||||||||||||||||| |||| |||||||||| |||| |||||    
T  21576774 aattcagtgtaattacaagtgtcgatgtcggacacgacacgtgtctgacac 21576724  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 23012437 - 23012380
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggaca 196  Q
    |||| |||||||||| | ||||||||||  ||||||||||||||| |||||| |||||    
T  23012437 aatttaatgtaattatatgtgtcggtgttggacacgacacatgtctgacaccgggaca 23012380  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 167
Target Start/End: Original strand, 8420057 - 8420085
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtc 167  Q
    |||||||||||||||||||||||||||||    
T  8420057 aattcaatgtaattacaagtgtcggtgtc 8420085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 173
Target Start/End: Complemental strand, 16207641 - 16207586
Alignment:
Q  120 aaaattttgagaaaatgaca--attcaatgtaattacaagtgtcggtgtcagacac 173  Q
    ||||||| |||||| |||||  |||||||||||| |||||||| ||||||||||||    
T  16207641 aaaatttagagaaattgacataattcaatgtaatcacaagtgttggtgtcagacac 16207586  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 42029782 - 42029826
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtc 183  Q
    ||||||||||||||| | || |||||||| |||||||||||||||    
T  42029782 aattcaatgtaattatatgtatcggtgtcggacacgacacatgtc 42029826  T

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Target: scaffold0652 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 197
Target Start/End: Complemental strand, 491 - 433
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggacac 197  Q
    |||||| |||||||||||||||||||||| |||||||| | |||| |||||| ||||||    
T  491 aattcagtgtaattacaagtgtcggtgtcggacacgacgcgtgtccgacaccgggacac 433  T

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Target: scaffold0314 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 8954 - 9007
Alignment:
Q  117 gataaaattttgagaaaatgac--aattcaatgtaattacaagtgtcggtgtca 168  Q
    ||||||||||||||||||||||  ||||||| ||||| ||||||||||||||||    
T  8954 gataaaattttgagaaaatgacataattcaacgtaatcacaagtgtcggtgtca 9007  T

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Target: scaffold0050 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 70308 - 70365
Alignment:
Q  139 aattcaatgtaattacaagtgtcggtgtcagacacgacacatgtcggacacccggaca 196  Q
    |||||| |||||||| ||||||||||||| |||||||||| |||| |||||| |||||    
T  70308 aattcagtgtaattataagtgtcggtgtcggacacgacacgtgtccgacaccaggaca 70365  T

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Target: scaffold0053 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 190
Target Start/End: Original strand, 8835 - 8879
Alignment:
Q  146 tgtaattacaagtgtcggtgtcagacacgacacatgtcggacacc 190  Q
    |||||||||||||||||||||| |||||||||| |||| ||||||    
T  8835 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgacacc 8879  T

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Target: scaffold0512 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0512
Description:

Target: scaffold0512; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 5058 - 5016
Alignment:
Q  146 tgtaattacaagtgtcggtgtcagacacgacacatgtcggaca 188  Q
    |||||||||||||||||||||| |||||||||| |||| ||||    
T  5058 tgtaattacaagtgtcggtgtcggacacgacacgtgtccgaca 5016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0697 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0697
Description:

Target: scaffold0697; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 189
Target Start/End: Original strand, 1683 - 1724
Alignment:
Q  148 taattacaagtgtcggtgtcagacacgacacatgtcggacac 189  Q
    |||||| ||||||||||||| ||||||||||||||| |||||    
T  1683 taattataagtgtcggtgtcggacacgacacatgtccgacac 1724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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