View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6085_high_9 (Length: 229)

Name: NF6085_high_9
Description: NF6085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6085_high_9
NF6085_high_9
[»] chr3 (2 HSPs)
chr3 (1-224)||(8102613-8102836)
chr3 (16-226)||(40147107-40147317)
[»] chr6 (2 HSPs)
chr6 (10-144)||(6500647-6500781)
chr6 (85-126)||(11969168-11969209)
[»] chr4 (5 HSPs)
chr4 (17-145)||(7615418-7615546)
chr4 (18-144)||(7655961-7656087)
chr4 (17-150)||(7628789-7628922)
chr4 (18-150)||(7637236-7637368)
chr4 (92-150)||(7606479-7606537)
[»] chr7 (3 HSPs)
chr7 (38-145)||(8910985-8911092)
chr7 (17-145)||(8935924-8936052)
chr7 (92-130)||(8938715-8938753)
[»] chr8 (1 HSPs)
chr8 (25-105)||(15196011-15196091)


Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 8102613 - 8102836
Alignment:
Q  1 cgtttcgtgcatcttccaagcacatttaccaagcccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaaa 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8102613 cgtttcgtgcatcttccaagcacatttaccaaacccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaaa 8102712  T
Q  101 taatcttccggcaatggtggaacaaacctttgtctaactcctatcccgaccataaaatatgcgttctcttgtggctctaattggtcggaacggatcactg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8102713 taatcttccggcaatggtggaacaaacctttgtctaactcctatcccgaccataaaatatgcgttctcttgtgggtctaattggtcggaacggatcactg 8102812  T
Q  201 agcaccaaaggtgtgcaaaaagtg 224  Q
    ||||||||||||||||||||||||    
T  8102813 agcaccaaaggtgtgcaaaaagtg 8102836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 16 - 226
Target Start/End: Complemental strand, 40147317 - 40147107
Alignment:
Q  16 ccaagcacatttaccaagcccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaaataatcttccggcaat 115  Q
    |||||||| |||||||||||| || |||||||||||||| ||  ||||||||| |||| || || || ||||||||||||||||||||||||| ||||||    
T  40147317 ccaagcacctttaccaagcccaccatcttccaacaactctcccgctttcattgtaaccctacaaacttcaacagcatttccaaaataatcttcaggcaat 40147218  T
Q  116 ggtggaacaaacctttgtctaactcctatcccgaccataaaatatgcgttctcttgtggctctaattggtcggaacggatcactgagcaccaaaggtgtg 215  Q
    |||||||||||||||  |||| |||||||| |||||||| ||||  | |  || ||||| || ||||| | |||||||||||| |||| |||||| ||||    
T  40147217 ggtggaacaaaccttgatctagctcctatcgcgaccatataataaacttcttcgtgtgggtcaaattgtttggaacggatcacagagcgccaaagatgtg 40147118  T
Q  216 caaaaagtgat 226  Q
     ||||||||||    
T  40147117 taaaaagtgat 40147107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 6500647 - 6500781
Alignment:
Q  10 catcttccaagcacatttaccaagcccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaaataatcttcc 109  Q
    ||||| |||||||| |||||||| ||||||||||||||||||||| ||| |||||||   |||| || || |||  ||||||||||||||||||||||      
T  6500647 catctcccaagcacctttaccaatcccgccttcttccaacaactcaccagctttcatgctaaccctacaatctatcacagcatttccaaaataatcttgt 6500746  T
Q  110 ggcaatggtggaacaaacctttgtctaactcctat 144  Q
    || ||| ||||||||| |||| ||||||| |||||    
T  6500747 ggtaatagtggaacaagccttggtctaacgcctat 6500781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 11969168 - 11969209
Alignment:
Q  85 aacagcatttccaaaataatcttccggcaatggtggaacaaa 126  Q
    ||||||||||||||||||||| ||||| ||||||| ||||||    
T  11969168 aacagcatttccaaaataatcctccggtaatggtgaaacaaa 11969209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 7615418 - 7615546
Alignment:
Q  17 caagcacatttaccaagcccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaaataatcttccggcaatg 116  Q
    ||||||| ||||| ||| || |||||||||| |||||||||||||||||||  ||||||| ||  || ||  |||||||||||||||| ||| || ||||    
T  7615418 caagcacctttacaaagtccaccttcttccaccaactccccaactttcattttaaccatacaacttataagtgcatttccaaaataatattctggtaatg 7615517  T
Q  117 gtggaacaaacctttgtctaactcctatc 145  Q
    ||||||| |||||| ||| ||||||||||    
T  7615518 gtggaactaaccttggtcgaactcctatc 7615546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 144
Target Start/End: Complemental strand, 7656087 - 7655961
Alignment:
Q  18 aagcacatttaccaagcccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaaataatcttccggcaatgg 117  Q
    |||||| |||||||| ||| ||||| ||||||||||||||||||||||||  || |    || ||| ||  || ||||||||||||||||||||||||||    
T  7656087 aagcacctttaccaatcccaccttcctccaacaactccccaactttcattttaaacccgcaacctataatcgcgtttccaaaataatcttccggcaatgg 7655988  T
Q  118 tggaacaaacctttgtctaactcctat 144  Q
    ||||||||  ||| |||||||||||||    
T  7655987 tggaacaagtcttggtctaactcctat 7655961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 7628789 - 7628922
Alignment:
Q  17 caagcacatttaccaagcccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaaataatcttccggcaatg 116  Q
    ||||||| ||||| ||| || ||||| |||||||| ||| || ||||||||  ||||||| ||  || ||  |||||||||||||||||||| || ||||    
T  7628789 caagcacctttacaaagtccaccttcctccaacaattcctcagctttcattttaaccatacaacttataagtgcatttccaaaataatcttctggtaatg 7628888  T
Q  117 gtggaacaaacctttgtctaactcctatcccgac 150  Q
    |||||| || |||| |||||||||||||| ||||    
T  7628889 gtggaataagccttggtctaactcctatcgcgac 7628922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 150
Target Start/End: Original strand, 7637236 - 7637368
Alignment:
Q  18 aagcacatttaccaagcccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaaataatcttccggcaatgg 117  Q
    |||||| ||||| ||| || ||||| |||||||| |||||| ||||||||  ||||||| ||  || ||  |||||||||||||||||||| || || ||    
T  7637236 aagcacctttacaaagtccaccttcctccaacaattccccagctttcattttaaccatacaacttataagtgcatttccaaaataatcttctggtaacgg 7637335  T
Q  118 tggaacaaacctttgtctaactcctatcccgac 150  Q
    |||||| |||||| ||| |||||||||| ||||    
T  7637336 tggaactaaccttggtcgaactcctatcacgac 7637368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 150
Target Start/End: Original strand, 7606479 - 7606537
Alignment:
Q  92 tttccaaaataatcttccggcaatggtggaacaaacctttgtctaactcctatcccgac 150  Q
    ||||||||||||||||| || |||||||||||||||||| ||| |||||||||| ||||    
T  7606479 tttccaaaataatcttctggtaatggtggaacaaaccttggtccaactcctatcacgac 7606537  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 8911092 - 8910985
Alignment:
Q  38 ccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaaataatcttccggcaatggtggaacaaacctttgtctaa 137  Q
    ||||| ||||||| ||||||||||||||||  ||||||| ||  |||||  |||||||||||||||| ||| || ||||||||||| |||||| ||| ||    
T  8911092 ccttcctccaacagctccccaactttcattttaaccatacaacttacaattgcatttccaaaataatattctggtaatggtggaactaaccttggtccaa 8910993  T
Q  138 ctcctatc 145  Q
    ||||||||    
T  8910992 ctcctatc 8910985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 145
Target Start/End: Complemental strand, 8936052 - 8935924
Alignment:
Q  17 caagcacatttaccaagcccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaaataatcttccggcaatg 116  Q
    ||||||| ||||| ||| || ||||| | ||||||||||||| || |||||  ||||||| ||  || ||| |||||||||||||||| ||| || ||||    
T  8936052 caagcacctttacaaagtccaccttccttcaacaactccccagctgtcattttaaccatacaacttataactgcatttccaaaataatattctggtaatg 8935953  T
Q  117 gtggaacaaacctttgtctaactcctatc 145  Q
    ||||||| |||||| ||| ||||||||||    
T  8935952 gtggaactaaccttggtccaactcctatc 8935924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 130
Target Start/End: Complemental strand, 8938753 - 8938715
Alignment:
Q  92 tttccaaaataatcttccggcaatggtggaacaaacctt 130  Q
    ||||||||||||||||| || ||||||||||||||||||    
T  8938753 tttccaaaataatcttctggtaatggtggaacaaacctt 8938715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 105
Target Start/End: Complemental strand, 15196091 - 15196011
Alignment:
Q  25 tttaccaagcccgccttcttccaacaactccccaactttcattgcaaccatagaagctacaacagcatttccaaaataatc 105  Q
    ||||||||||||||||||||| || | |||||  |||||||||| ||||  | || |||  | ||||||||||||||||||    
T  15196091 tttaccaagcccgccttcttctaatagctccctgactttcattgtaaccccacaaactatcatagcatttccaaaataatc 15196011  T

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