View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6085_low_1 (Length: 490)
Name: NF6085_low_1
Description: NF6085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6085_low_1 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 28 - 490
Target Start/End: Original strand, 30024463 - 30024925
Alignment:
| Q |
28 |
gtactactaagattttcatgcctaccctacctagagatcattgttttgaacaattcaacacttcaagttcaactacttccatgtgaataaaaatctcaac |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30024463 |
gtactactaagattttcatgcctaccctacctagagatcattgttttgaacaattcaacacttcaagttcaactacttccatgtgaataaaaatctcaac |
30024562 |
T |
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| Q |
128 |
aactaccatagcacatgaatcagttacaaacttagaatggtacacacaacaagacacataggagtagttcattaacctagtacaacaaacattgaaagta |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30024563 |
aactaccatagcacatgaatcagttacaaacttagaatggtacacacaacaagacacataggagtagttcattaacctagtacaacaaacattgaaagta |
30024662 |
T |
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| Q |
228 |
acaaactataagctaaatgctaatttgatcaattcaaggacagaaagtgaccaaataattagccatagaacaagtaacaatacttgtaggatcatcaaag |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30024663 |
acaaactataagctaaatgctaatttgatcaattcaaggacagaaagtgaccaaataattagccatagaacaagtaacaatacttgtaggatcatcaaag |
30024762 |
T |
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| Q |
328 |
gcataagagtaagccttagggcaagccaacttaaagattctcgaataactagtgggcttacaagcctgtgggcttccataactacccgtgcaacaatact |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30024763 |
gcataagagtaagccttagggcaagccaacttaaagattctcgaataactagtgggcttacaagcctgtgggcttccataactacccgtgcaacaatact |
30024862 |
T |
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| Q |
428 |
taggtgagttaaaagcataacaagcactcttacaacccaccacttgattcatctcactcgacc |
490 |
Q |
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| T |
30024863 |
caggtgagttaaaagcataacaagcactcttacagcccaccacttgattcatgtcacttgacc |
30024925 |
T |
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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 298 - 470
Target Start/End: Original strand, 45273168 - 45273340
Alignment:
| Q |
298 |
caagtaacaatacttgtaggatcatcaaaggcataagagtaagccttagggcaagccaacttaaagattctcgaataactagtgggcttacaagcctgtg |
397 |
Q |
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|||||| ||||||| ||||| |||||| | ||||||||||||||||| |||||||| || |||||||| |||||| ||||||||| || | ||||| |
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| T |
45273168 |
caagtagcaatactggtagggtcatcataagcataagagtaagcctttgggcaagcagttttgaagattcttgaataagcagtgggcttgcaggtctgtg |
45273267 |
T |
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| Q |
398 |
ggcttccataactacccgtgcaacaatacttaggtgagttaaaagcataacaagcactcttacaacccaccac |
470 |
Q |
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|| | ||| | |||| || || |||||| |||| ||||| |||||| ||||||||| ||||||||||||| |
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| T |
45273268 |
gggtaccaaagttaccagtacagcaatacctaggagagttgaaagcagcacaagcacttctacaacccaccac |
45273340 |
T |
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