View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6085_low_3 (Length: 331)
Name: NF6085_low_3
Description: NF6085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6085_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 19 - 326
Target Start/End: Complemental strand, 19492685 - 19492378
Alignment:
| Q |
19 |
gaaattccctcagcatttcctacttgaataagtttaccatttccttacctaagcagggatttttggagctttcaagagaagcaattcattatgtcaattg |
118 |
Q |
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||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
19492685 |
gaaattccctccggatttcctacttgaataagtttaccatttccttacctaagcagggatttttggagctttcaagaaaagcaattcattatgtcaattg |
19492586 |
T |
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| Q |
119 |
caaccctatagctttgaaagttttgagatcatttcatcgactttacacaagtgaaatcgactggaaatgtgcactagccaaactaaaggaaatctccaat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19492585 |
caaccctatagctttgaaagttttgagatcatttcatcgactttacacaagtgaaatcgactggaaatgtgcactagcaaaactaaaggaaatctccaat |
19492486 |
T |
|
| Q |
219 |
gccaaaataatgagatggacttataaatttcagatttggggaacaggacaagtttgggcactctttcaggcttacagatcaatgaaggtcatgtttggac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19492485 |
gccaaaataatgagatggacttataaatttcagatttggggaacaggacaagtttgggcactctttcaggcttacagatcaatgaaggtcatgtttggac |
19492386 |
T |
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| Q |
319 |
attctgtg |
326 |
Q |
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|||||||| |
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| T |
19492385 |
attctgtg |
19492378 |
T |
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