View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6085_low_8 (Length: 240)
Name: NF6085_low_8
Description: NF6085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6085_low_8 |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0190 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 8102481 - 8102242
Alignment:
| Q |
1 |
tgatgtttatggcaataattttggatggggaaaaccagtggcagttcgtagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8102481 |
tgatgtttatggcaataattttggatggggaaaaccagtggcagttcgcagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaa |
8102382 |
T |
|
| Q |
101 |
ggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcctgttttcatggactttgtatccaattaacgtgggttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8102381 |
ggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcctgttttcatgaactttgtatccaattaacgtgggttta |
8102282 |
T |
|
| Q |
201 |
aaatttgcaaaattggtttggtactattttagttcatatt |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
8102281 |
aaatttgcaaaattggtttggtactattttagttcatatt |
8102242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 40147458 - 40147681
Alignment:
| Q |
1 |
tgatgtttatggcaataattttggatggggaaaaccagtggcagttcgtagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaa |
100 |
Q |
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|||||||||||| ||| |||||||||||||| |||| ||||||||||| |||||||||||| ||||||| || || ||||||||||||||| ||||||| |
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| T |
40147458 |
tgatgtttatggtaatgattttggatggggagaacctgtggcagttcgcagtggaaataaaataagtggaatgattactgtatttgctggaaaagaagaa |
40147557 |
T |
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| Q |
101 |
ggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcctgttttcatggactttgtatccaattaacgtgggttta |
200 |
Q |
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| T |
40147558 |
ggtagcatggactttcaagtgtgtcttcctcacaagattttggaggcaatgggaaatgaccatgacttcatggatgttgtgtctaattagtgtgagttta |
40147657 |
T |
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| Q |
201 |
aaatttgcaaaattggtttggtac |
224 |
Q |
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| |||||||||| ||||||||| |
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| T |
40147658 |
aggtttgcaaaatcagtttggtac |
40147681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 7656230 - 7656403
Alignment:
| Q |
1 |
tgatgtttatggcaataattttggatggggaaaaccagtggcagttcgtagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaa |
100 |
Q |
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|||||||||||| ||| |||||||||||||||| || |||||||||||||||||||||||| || |||| || || || |||||||||||||||||| |
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| T |
7656230 |
tgatgtttatggtaatgattttggatggggaaagcctgtggcagttcgtagtggaaataaaacaaatggaatggtttgtgcctttgctggaatagaagaa |
7656329 |
T |
|
| Q |
101 |
ggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcctgttttcatgga |
174 |
Q |
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| ||| || ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7656330 |
gctagcattgaccttcaagtgtgtcttccttacaagattttggaggcaatgggaaatgatcctgagttcatgga |
7656403 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 7606262 - 7606108
Alignment:
| Q |
1 |
tgatgtttatggcaataattttggatggggaaaaccagtggcagttcgtagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaa |
100 |
Q |
| |
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|||||||||||| ||| |||| |||||||||||||| | ||||||||||||||| ||||| || |||| | | |||||||||||||||||||||| |
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| T |
7606262 |
tgatgtttatggtaatgatttcggatggggaaaacctatagcagttcgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaa |
7606163 |
T |
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| Q |
101 |
ggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaa |
155 |
Q |
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|||||||| ||||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
7606162 |
ggtagtattgaccttcaagtatgtcttccttacaaggttttggaggcaatgggaa |
7606108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 7637090 - 7636932
Alignment:
| Q |
1 |
tgatgtttatggcaataattttggatggggaaaaccagtggcagttcgtagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaa |
100 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||| || ||||||||||||||||| ||||| || |||||| || | |||||||| |||||||||||| |
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| T |
7637090 |
tgatgtttatggtaatgattttggatggggaaagcctctggcagttcgtagtggatataaaataaatggacttattacggtatttgccggaatagaagaa |
7636991 |
T |
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| Q |
101 |
ggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga |
159 |
Q |
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|||||||| ||||||||||| |||||||||| |||||||||||| |||||||||||| |
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| T |
7636990 |
ggtagtatagaccttcaagtttgtcttcctcgtgagattttggagggaatgggaaatga |
7636932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 7615276 - 7615118
Alignment:
| Q |
1 |
tgatgtttatggcaataattttggatggggaaaaccagtggcagttcgtagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaa |
100 |
Q |
| |
|
|||||||||||| ||| ||||||| |||||||| || |||||||||||||||||| ||||| || |||||| || | || |||||||||||||||||| |
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| T |
7615276 |
tgatgtttatggtaatgattttggttggggaaagcctgtggcagttcgtagtggatataaaggaaatggacttattacggtttttgctggaatagaagaa |
7615177 |
T |
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| Q |
101 |
ggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga |
159 |
Q |
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|||||||| || |||||||| |||||| | || ||||||||||||||||||||||||| |
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| T |
7615176 |
ggtagtatagatcttcaagtttgtctttcacatgagattttggaggcaatgggaaatga |
7615118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 7628636 - 7628556
Alignment:
| Q |
79 |
tgtatttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| | ||||||||| || ||||||||||||||||||||||||| |
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| T |
7628636 |
tgtatttgctggaatagaagaaggtagtattgaccttcaaatctgtcttccttacgagattttggaggcaatgggaaatga |
7628556 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 8936185 - 8936343
Alignment:
| Q |
1 |
tgatgtttatggcaataattttggatggggaaaaccagtggcagttcgtagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaa |
100 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||| || || |||| |||| ||||| ||||| || |||||| || | |||||||| |||||||||||| |
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| T |
8936185 |
tgatgtttatggtaatgattttggatggggaaagcctgtagcaggtcgtggtggatataaagcaaatggacttattacagtatttgccggaatagaagaa |
8936284 |
T |
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| Q |
101 |
ggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatga |
159 |
Q |
| |
|
|||||||| ||||||||||| |||||||| | ||||||||||||||||||||||||| |
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| T |
8936285 |
ggtagtattgaccttcaagtttgtcttccatatgagattttggaggcaatgggaaatga |
8936343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 155
Target Start/End: Original strand, 8941830 - 8941983
Alignment:
| Q |
1 |
tgatgtttatggcaataattttggatggggaaaaccagtggcagttcgtagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaa |
100 |
Q |
| |
|
|||||||||||| ||| |||| |||||||||||||| | ||||| ||||||||| ||||| || |||| | | |||||||||||||||||||||| |
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| T |
8941830 |
tgatgtttatggtaatgatttcggatggggaaaacctatagcagt-cgtagtggatataaaataaatggaattgtaaatgtatttgctggaatagaagaa |
8941928 |
T |
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| Q |
101 |
ggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaa |
155 |
Q |
| |
|
|||||||| ||||||||||||||||||||| || || |||||||||||||||||| |
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| T |
8941929 |
ggtagtattgaccttcaagtatgtcttccttacgaggttttggaggcaatgggaa |
8941983 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 24 - 159
Target Start/End: Original strand, 8913705 - 8913840
Alignment:
| Q |
24 |
gatggggaaaaccagtggcagttcgtagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaaggtagtatggaccttcaagtatg |
123 |
Q |
| |
|
|||||||||| || |||||||||||||||||| ||||| || |||||| || | ||||||| |||||||||||||||| ||| ||||||||||| || |
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| T |
8913705 |
gatggggaaagcctgtggcagttcgtagtggatataaaataaatggacttattacagtatttgtcggaatagaagaaggtattatagaccttcaagtttg |
8913804 |
T |
|
| Q |
124 |
tcttcctcacaagattttggaggcaatgggaaatga |
159 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||| |
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| T |
8913805 |
tcttcctcgtgagattttggagggaatgggaaatga |
8913840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 6500525 - 6500375
Alignment:
| Q |
1 |
tgatgtttatggcaataattttggatggggaaaaccagtggcagttcgtagtggaaataaacaaagtggactgtttgctgtatttgctggaatagaagaa |
100 |
Q |
| |
|
|||| ||||||| ||| ||||||||||||| ||||| |||||| |||| |||| ||||||| | ||| || || |||||||||||||| |||| || |
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| T |
6500525 |
tgatatttatggtaatgattttggatgggggaaacccgtggcatttcgcagtgtaaataaaatagatggtatggttagtgtatttgctggaaaagaataa |
6500426 |
T |
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| Q |
101 |
ggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatg |
151 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| |||||| |||||| |||||| |
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| T |
6500425 |
ggtagtatagaccttcaagtttgtcttccttacaagactttggaagcaatg |
6500375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 162
Target Start/End: Complemental strand, 11968861 - 11968792
Alignment:
| Q |
93 |
tagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcc |
162 |
Q |
| |
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|||||||||||||||| ||| || |||| ||||||||| |||||||||||||||| ||| ||||||||| |
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| T |
11968861 |
tagaagaaggtagtatagactttgaagtgtgtcttccttacaagattttggaggccatgaaaaatgatcc |
11968792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 164
Target Start/End: Original strand, 15196335 - 15196416
Alignment:
| Q |
83 |
tttgctggaatagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcctg |
164 |
Q |
| |
|
|||||||| | ||||||||| ||||||||| || |||| |||||||| ||||||||||||||| ||||||||||| |||| |
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| T |
15196335 |
tttgctggtaaagaagaaggaagtatggactttgaagtgtgtcttccatacaagattttggaggtcatgggaaatgaccctg |
15196416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 15745034 - 15745074
Alignment:
| Q |
1 |
tgatgtttatggcaataattttggatggggaaaaccagtgg |
41 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||| |||| |
|
|
| T |
15745034 |
tgatgtttatggcaatgattttggttggggaaaacctgtgg |
15745074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0190 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0190
Description:
Target: scaffold0190; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 164
Target Start/End: Complemental strand, 4390 - 4319
Alignment:
| Q |
93 |
tagaagaaggtagtatggaccttcaagtatgtcttcctcacaagattttggaggcaatgggaaatgatcctg |
164 |
Q |
| |
|
||||||| ||||| ||||||||| |||||||||||||| | |||||||||||||| |||||||||||| |
|
|
| T |
4390 |
tagaagatggtagcatggaccttgaagtatgtcttccttgtgaaattttggaggcaattagaaatgatcctg |
4319 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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