View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6086_high_24 (Length: 234)

Name: NF6086_high_24
Description: NF6086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6086_high_24
NF6086_high_24
[»] scaffold0193 (2 HSPs)
scaffold0193 (1-84)||(24133-24216)
scaffold0193 (136-218)||(24268-24350)
[»] chr5 (8 HSPs)
chr5 (142-215)||(33821885-33821958)
chr5 (157-209)||(33734624-33734676)
chr5 (144-214)||(33867117-33867187)
chr5 (157-214)||(33749091-33749148)
chr5 (154-210)||(33904682-33904738)
chr5 (156-214)||(33698779-33698837)
chr5 (157-215)||(33680182-33680240)
chr5 (157-210)||(33763453-33763506)
[»] scaffold0247 (2 HSPs)
scaffold0247 (144-211)||(21861-21928)
scaffold0247 (11-49)||(21133-21171)
[»] scaffold0023 (1 HSPs)
scaffold0023 (154-214)||(90068-90128)
[»] chr7 (1 HSPs)
chr7 (156-211)||(5470128-5470183)
[»] scaffold0001 (1 HSPs)
scaffold0001 (154-210)||(149083-149139)


Alignment Details
Target: scaffold0193 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 24133 - 24216
Alignment:
Q  1 attttactagtgatttactcacgagtttacgattatacattagtttagtcttgaaacaaagatttttggaaaacattagccaac 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24133 attttactagtgatttactcacgagtttacgattatacattagtttagtcttgaaacaaagatttttggaaaacattagccaac 24216  T

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Target: scaffold0193; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 136 - 218
Target Start/End: Original strand, 24268 - 24350
Alignment:
Q  136 gtgttccatacatgcacctgacaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaacccttac 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24268 gtgttccatacatgcacctgacaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaacccttac 24350  T

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Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 142 - 215
Target Start/End: Complemental strand, 33821958 - 33821885
Alignment:
Q  142 catacatgcacctgacaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaaccct 215  Q
    |||| |||||| || ||||||||||||| |||||||||||||||||||| || |||||||||||||||||||||    
T  33821958 catatatgcacttggcaggattgaatagatgtcgaaaaagttgtagattgaggtgggtaaattatttaaaccct 33821885  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 33734676 - 33734624
Alignment:
Q  157 caggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattattta 209  Q
    ||||||||||||| |||||||||||||||||||| || |||||||||||||||    
T  33734676 caggattgaatagatgtcgaaaaagttgtagattgaggtgggtaaattattta 33734624  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 33867187 - 33867117
Alignment:
Q  144 tacatgcacctgacaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaaccc 214  Q
    |||||| || || |||||||||||||||| || |||||||||||||| || ||| ||||||||||||||||    
T  33867187 tacatgtacttggcaggattgaataggtgccggaaaagttgtagattgaggtggttaaattatttaaaccc 33867117  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 157 - 214
Target Start/End: Complemental strand, 33749148 - 33749091
Alignment:
Q  157 caggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaaccc 214  Q
    ||||| ||||||||||  |||||||||||||||| |||||| ||||||||||||||||    
T  33749148 caggactgaataggtgcagaaaaagttgtagattgagatggttaaattatttaaaccc 33749091  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 33904738 - 33904682
Alignment:
Q  154 tgacaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaa 210  Q
    ||||||||||||||||||| |||||||| |||||||| || ||| ||||||||||||    
T  33904738 tgacaggattgaataggtgccgaaaaagctgtagattgaggtggttaaattatttaa 33904682  T

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Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 33698837 - 33698779
Alignment:
Q  156 acaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaaccc 214  Q
    ||||| |||||||||||||| |||||||||||||| || ||| | ||||||||||||||    
T  33698837 acaggtttgaataggtgtcggaaaagttgtagattgaggtggttgaattatttaaaccc 33698779  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 215
Target Start/End: Complemental strand, 33680240 - 33680182
Alignment:
Q  157 caggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaaccct 215  Q
    |||| |||||||| || || |||||||||||||| || ||||| |||||||||||||||    
T  33680240 caggtttgaatagatgccggaaaagttgtagattgaggtgggtgaattatttaaaccct 33680182  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 33763506 - 33763453
Alignment:
Q  157 caggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaa 210  Q
    ||||||||| ||| || ||||||||||||||||| || ||| ||||||||||||    
T  33763506 caggattgagtagatgccgaaaaagttgtagattgaggtggttaaattatttaa 33763453  T

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Target: scaffold0247 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 144 - 211
Target Start/End: Original strand, 21861 - 21928
Alignment:
Q  144 tacatgcacctgacaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaa 211  Q
    |||||| || |||||||||||||||| |||||||||||||||||||| || |||||||||||||||||    
T  21861 tacatgtacttgacaggattgaatagatgtcgaaaaagttgtagattgaggtgggtaaattatttaaa 21928  T

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Target: scaffold0247; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 49
Target Start/End: Original strand, 21133 - 21171
Alignment:
Q  11 tgatttactcacgagtttacgattatacattagtttagt 49  Q
    |||||||||||| || |||||||||||||||||||||||    
T  21133 tgatttactcacaaggttacgattatacattagtttagt 21171  T

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Target: scaffold0023 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 90068 - 90128
Alignment:
Q  154 tgacaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaaccc 214  Q
    |||||||||| ||||||||||||||||||||||||||||| ||| | || |||||||||||    
T  90068 tgacaggattaaataggtgtcgaaaaagttgtagattaaggtggtttaactatttaaaccc 90128  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 156 - 211
Target Start/End: Original strand, 5470128 - 5470183
Alignment:
Q  156 acaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaaa 211  Q
    |||||||||||||| |||||||||||||||||||| || ||| |||||||||||||    
T  5470128 acaggattgaatagatgtcgaaaaagttgtagattgaggtggataaattatttaaa 5470183  T

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Target: scaffold0001 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 154 - 210
Target Start/End: Complemental strand, 149139 - 149083
Alignment:
Q  154 tgacaggattgaataggtgtcgaaaaagttgtagattaagatgggtaaattatttaa 210  Q
    |||||| |||||||||||| || ||||| |||||||| || ||| ||||||||||||    
T  149139 tgacagaattgaataggtgccgcaaaagctgtagattgaggtggttaaattatttaa 149083  T

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