View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6086_low_10 (Length: 339)

Name: NF6086_low_10
Description: NF6086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6086_low_10
NF6086_low_10
[»] chr6 (4 HSPs)
chr6 (11-321)||(5921339-5921649)
chr6 (218-315)||(26967974-26968071)
chr6 (242-290)||(16733009-16733057)
chr6 (218-287)||(14813212-14813281)
[»] chr5 (4 HSPs)
chr5 (18-321)||(20325648-20325951)
chr5 (45-192)||(15447253-15447400)
chr5 (211-289)||(29125294-29125372)
chr5 (82-130)||(26470445-26470493)
[»] chr3 (3 HSPs)
chr3 (218-284)||(19588505-19588571)
chr3 (218-284)||(12283720-12283786)
chr3 (92-289)||(49728189-49728386)
[»] chr1 (2 HSPs)
chr1 (218-284)||(52776100-52776166)
chr1 (218-287)||(2358144-2358213)
[»] chr2 (4 HSPs)
chr2 (112-284)||(29497877-29498049)
chr2 (44-263)||(34893126-34893345)
chr2 (82-128)||(13129139-13129185)
chr2 (220-289)||(8309856-8309925)
[»] scaffold0329 (1 HSPs)
scaffold0329 (218-284)||(9429-9495)
[»] chr4 (4 HSPs)
chr4 (218-284)||(22178736-22178802)
chr4 (244-287)||(10636536-10636579)
chr4 (218-287)||(5237754-5237823)
chr4 (48-164)||(25226927-25227044)
[»] chr8 (1 HSPs)
chr8 (244-287)||(188136-188179)


Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 321
Target Start/End: Original strand, 5921339 - 5921649
Alignment:
Q  11 cacagatacaagatggaattggtctatgtggtgaaagttcttcccataacgctttcaattcagtaaaatactcaagaacatattttgcaccttgtttcaa 110  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5921339 cacaaatacaagatggaattggtctatgtgatgaaagttcttcccataacgctttcaattcagtaaaatactcaagaacatattttgcaccttgtttcaa 5921438  T
Q  111 attgttaatagaagaacgcaaatttgtaatacgaatgcgatcaaccttagagaaactttcatggagatcttgccatacctcatatgcaatgacaaagaag 210  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| ||||||||| |||||    
T  5921439 attgttaatagaagaacgcaaatttgcaatacaaatgcgatcaaccttagagatacgttcatggagatcttgccatacctcataagcaatgacatagaag 5921538  T
Q  211 acaacaatttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttcccatgcagaccggttaagatcatcaagat 310  Q
    |||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5921539 acaacagtttgagcaatagaatttgaaacggaattgatgagccaagattgaaccaaatggttgcaacattcccatgcagaccggttaagatcatcaagat 5921638  T
Q  311 caggttgttca 321  Q
      |||||||||    
T  5921639 tgggttgttca 5921649  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 315
Target Start/End: Complemental strand, 26968071 - 26967974
Alignment:
Q  218 tttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttcccatgcagaccggttaagatcatcaagatcaggt 315  Q
    |||||||||| |||| ||||||  |||| |||||||||||||||||||| || ||||  ||||||||  ||   ||||||||||| ||||| ||||||    
T  26968071 tttgagcaatggaatatgaaacagaattaatgagccaagattgaaccaagtgattgctgcgttcccaaacactacggttaagatcttcaaggtcaggt 26967974  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 16733009 - 16733057
Alignment:
Q  242 aattgatgagccaagattgaaccaaatggttgcaacgttcccatgcaga 290  Q
    ||||||||||||||||||| |||||||| || || ||||||||||||||    
T  16733009 aattgatgagccaagattgcaccaaatgattacaccgttcccatgcaga 16733057  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 287
Target Start/End: Complemental strand, 14813281 - 14813212
Alignment:
Q  218 tttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttcccatgc 287  Q
    |||||||||| || || |||||  | ||||| |||||||||||||||||||| || || |||||||||||    
T  14813281 tttgagcaatggactcagaaacagagttgataagccaagattgaaccaaatgattacagcgttcccatgc 14813212  T

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Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 321
Target Start/End: Original strand, 20325648 - 20325951
Alignment:
Q  18 acaagatggaattggtctatgtggtgaaagttcttcccataacgctttcaattcagtaaaatactcaagaacatattttgcaccttgtttcaaattgtta 117  Q
    |||||||||||| |||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||    
T  20325648 acaagatggaataggtctatgtgatgaaagttcttcccataaagatttcaattcagtaaaatactcaagaacagattttgcaccttgtttcaagttgtta 20325747  T
Q  118 atagaagaacgcaaatttgtaatacgaatgcgatcaaccttagagaaactttcatggagatcttgccatacctcatatgcaatgacaaagaagacaacaa 217  Q
    || |||||||||||||||| ||||||||| |||||| ||||||| |||| |||||| |||||||||||||||||||| ||| || || | |||||||||     
T  20325748 atggaagaacgcaaatttgcaatacgaatacgatcagccttagaaaaacgttcatgaagatcttgccatacctcataagcagtgtcataaaagacaacag 20325847  T
Q  218 tttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttcccatgcagaccggttaagatcatcaagatcaggttg 317  Q
    ||||||||||||||||||||||  ||||||| | ||||||||| ||||||   || ||||||||||||||||| || |||||||||||||||||||||||    
T  20325848 tttgagcaatagaatctgaaacagaattgattatccaagattgcaccaaaaaattacaacgttcccatgcagatcgattaagatcatcaagatcaggttg 20325947  T
Q  318 ttca 321  Q
    ||||    
T  20325948 ttca 20325951  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 45 - 192
Target Start/End: Complemental strand, 15447400 - 15447253
Alignment:
Q  45 aagttcttcccataacgctttcaattcagtaaaatactcaagaacatattttgcaccttgtttcaaattgttaatagaagaacgcaaatttgtaatacga 144  Q
    ||||||||||||||| |||||||| ||||| |||||||| | |||| || ||| ||||||||| | ||||||||| || ||||| ||||||  ||| | |    
T  15447400 aagttcttcccataaagctttcaactcagtgaaatactccaaaacaaatattgaaccttgtttgagattgttaatggaggaacgtaaattttcaattcta 15447301  T
Q  145 atgcgatcaaccttagagaaactttcatggagatcttgccatacctca 192  Q
    || |||||||| || || ||||  || |  ||||||||||| ||||||    
T  15447300 atacgatcaacttttgaaaaacgctccttaagatcttgccaaacctca 15447253  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 29125372 - 29125294
Alignment:
Q  211 acaacaatttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttcccatgcag 289  Q
    |||||| |||| ||||| ||||| |||||| | ||||| |||||||| || |||||||| ||||| |||||||||||||    
T  29125372 acaacagtttgtgcaattgaatcagaaacggagttgataagccaagactgcaccaaatgattgcagcgttcccatgcag 29125294  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 26470493 - 26470445
Alignment:
Q  82 tcaagaacatattttgcaccttgtttcaaattgttaatagaagaacgca 130  Q
    ||||||||| ||||  |||||||||||| ||||||||| ||||||||||    
T  26470493 tcaagaacagatttatcaccttgtttcagattgttaatggaagaacgca 26470445  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 284
Target Start/End: Original strand, 19588505 - 19588571
Alignment:
Q  218 tttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttccca 284  Q
    |||||||||| ||||| |||||| |||| || ||||||||||| |||||||||||||| ||||||||    
T  19588505 tttgagcaattgaatcagaaacggaattaataagccaagattgtaccaaatggttgcatcgttccca 19588571  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 284
Target Start/End: Complemental strand, 12283786 - 12283720
Alignment:
Q  218 tttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttccca 284  Q
    |||||||||| |||||  ||||  |||| |||||||||||||| |||||||||||||| ||||||||    
T  12283786 tttgagcaattgaatcaaaaactgaattaatgagccaagattgtaccaaatggttgcatcgttccca 12283720  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 289
Target Start/End: Original strand, 49728189 - 49728386
Alignment:
Q  92 attttgcaccttgtttcaaattgttaatagaagaacgcaaatttgtaatacgaatgcgatcaaccttagagaaactttcatggagatcttgccatacctc 191  Q
    |||||||||| ||||| | |||||| || |||||||||| ||||| ||| |||||||||||||  ||| |||||| ||| |  |  ||  |||| |||||    
T  49728189 attttgcaccctgtttgagattgttgattgaagaacgcatatttgcaatgcgaatgcgatcaattttaaagaaacgttctttcaagtcaagccaaacctc 49728288  T
Q  192 atatgcaatgacaaagaagacaacaatttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttcccatgcag 289  Q
    |  |||| |  || |||| ||||   |||| || || ||||| |||||  |||||||||||||||||||||| |  || |||||||||||||| ||||    
T  49728289 aagtgcagtatcacagaaaacaatggtttgcgcgatggaatcagaaactgaattgatgagccaagattgaacaaggtgattgcaacgttcccaagcag 49728386  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 284
Target Start/End: Complemental strand, 52776166 - 52776100
Alignment:
Q  218 tttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttccca 284  Q
    |||||||||| ||||| |||||  |||| |||||||||||||| |||||||||||||| ||||||||    
T  52776166 tttgagcaattgaatcagaaactgaattaatgagccaagattgtaccaaatggttgcatcgttccca 52776100  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 287
Target Start/End: Complemental strand, 2358213 - 2358144
Alignment:
Q  218 tttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttcccatgc 287  Q
    |||||||||| || || |||||  | ||||| |||||||||||||||||||| || || |||||||||||    
T  2358213 tttgagcaatggactcagaaacagagttgataagccaagattgaaccaaatgattacagcgttcccatgc 2358144  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 112 - 284
Target Start/End: Complemental strand, 29498049 - 29497877
Alignment:
Q  112 ttgttaatagaagaacgcaaatttgtaatacgaatgcgatcaaccttagagaaactttcatggagatcttgccatacctcatatgcaatgacaaagaaga 211  Q
    |||||||| | |||||||| ||| | ||| || || |||||||||||||| || ||||| || ||||| ||||| || ||| | ||| |  || |||| |    
T  29498049 ttgttaatggtagaacgcagattagcaatgcgtatacgatcaaccttagaaaatctttcttgcagatcatgccaaacatcaaaggcagtatcatagaaaa 29497950  T
Q  212 caacaatttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttccca 284  Q
    ||| | ||||||||||  |||| ||||| |||||  | ||||||||||| |||| ||||||||| ||||||||    
T  29497949 caatagtttgagcaatgaaatcagaaacaaaattagtaagccaagattgtaccacatggttgcatcgttccca 29497877  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 263
Target Start/End: Original strand, 34893126 - 34893345
Alignment:
Q  44 aaagttcttcccataacgctttcaattcagtaaaatactcaagaacatattttgcaccttgtttcaaattgttaatagaagaacgcaaatttgtaatacg 143  Q
    ||||||||||||| |  ||||||||||||||||||||||| |  ||| |||| | |||||| || |  |||||||| || ||||| | ||||| ||| ||    
T  34893126 aaagttcttcccaaagagctttcaattcagtaaaatactctaagacagatttggaaccttgcttgaggttgttaatggaggaacgtagatttgcaatgcg 34893225  T
Q  144 aatgcgatcaaccttagagaaactttcatggagatcttgccatacctcatatgcaatgacaaagaagacaacaatttgagcaatagaatctgaaacgaaa 243  Q
    ||| |||||||| ||||| || | ||  | |||||||||||| || ||| | ||| || ||   ||||| |   |||| ||||||||||  |||||  ||    
T  34893226 aatacgatcaactttagaaaatcatttgttgagatcttgccaaacatcaaaggcagtgtcatgaaagacgatcgtttgcgcaatagaattagaaacataa 34893325  T
Q  244 ttgatgagccaagattgaac 263  Q
    |||||| |||||||||||||    
T  34893326 ttgatgggccaagattgaac 34893345  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 82 - 128
Target Start/End: Complemental strand, 13129185 - 13129139
Alignment:
Q  82 tcaagaacatattttgcaccttgtttcaaattgttaatagaagaacg 128  Q
    ||||||||| ||||  |||||||||||||||||||||| ||||||||    
T  13129185 tcaagaacagatttatcaccttgtttcaaattgttaatggaagaacg 13129139  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 289
Target Start/End: Complemental strand, 8309925 - 8309856
Alignment:
Q  220 tgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttcccatgcag 289  Q
    |||| ||| ||||| ||||| || || ||||||||||||||||| | ||| ||||| |||||||||||||    
T  8309925 tgagaaattgaatcagaaacaaagttaatgagccaagattgaacgagatgattgcaccgttcccatgcag 8309856  T

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Target: scaffold0329 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 284
Target Start/End: Complemental strand, 9495 - 9429
Alignment:
Q  218 tttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttccca 284  Q
    |||||||||| ||||| || ||  |||| |||||||||||||| |||||||||||||| ||||||||    
T  9495 tttgagcaattgaatcagagactgaattaatgagccaagattgtaccaaatggttgcatcgttccca 9429  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 284
Target Start/End: Original strand, 22178736 - 22178802
Alignment:
Q  218 tttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttccca 284  Q
    |||||||||| ||||| || ||  |||| |||||||||||||| |||||||||||||| ||||||||    
T  22178736 tttgagcaattgaatcagagactgaattaatgagccaagattgtaccaaatggttgcatcgttccca 22178802  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 10636579 - 10636536
Alignment:
Q  244 ttgatgagccaagattgaaccaaatggttgcaacgttcccatgc 287  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||    
T  10636579 ttgataagccaagattgaaccaaatgattgcatcgttcccatgc 10636536  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 287
Target Start/End: Complemental strand, 5237823 - 5237754
Alignment:
Q  218 tttgagcaatagaatctgaaacgaaattgatgagccaagattgaaccaaatggttgcaacgttcccatgc 287  Q
    |||||||||| || || |||||  | ||||| |||||||||||||||||||| || || |||||||||||    
T  5237823 tttgagcaatggactcagaaacagagttgataagccaagattgaaccaaatgattacagcgttcccatgc 5237754  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 25227044 - 25226927
Alignment:
Q  48 ttcttcccataacgctttcaattcagtaaaatactcaagaacatattttgcaccttgtttcaaattgttaatagaagaacgcaaatttgtaa-tacgaat 146  Q
    |||||||||||| ||||||| |||| | |||||||| |  |||||||| | ||||||| | | ||||||||  |||||||||| ||||| || | | ||     
T  25227044 ttcttcccataaagctttcatttcaatgaaatactctaacacatatttggtaccttgtctaagattgttaaaggaagaacgcatatttgcaatttctaag 25226945  T
Q  147 gcgatcaaccttagagaa 164  Q
    |||||||| |||||||||    
T  25226944 gcgatcaatcttagagaa 25226927  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 244 - 287
Target Start/End: Complemental strand, 188179 - 188136
Alignment:
Q  244 ttgatgagccaagattgaaccaaatggttgcaacgttcccatgc 287  Q
    ||||| |||||||||||||||||||| ||||| |||||||||||    
T  188179 ttgataagccaagattgaaccaaatgattgcatcgttcccatgc 188136  T

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