View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6086_low_12 (Length: 301)
Name: NF6086_low_12
Description: NF6086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6086_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 34946815 - 34946554
Alignment:
| Q |
18 |
acaggttgtttcaggtttaacaggaaccaataacttgagttttgttggtgggaacatgtttaaatccatccctcaagctgatgctgtttcgctcaaggta |
117 |
Q |
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| T |
34946815 |
acaggttgtttcaggtttaacaggaaccaataacttgagttttgttggtgggaacatgtttaaatccatccctcaagctgatgctgtttcgctcaaggta |
34946716 |
T |
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| Q |
118 |
tatatcatacaacagttagcatgatgccnnnnnnnnnnnnnnnnnnnnnaattacatctaatactctatgaaccgatatttcagattgaaaatgtattac |
217 |
Q |
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| T |
34946715 |
tatatcatacaacagttagcatgatgcc--tttttttttgtttgtttttaattacatctaatactatatgaaccgatatttcagattgaaagtgtattac |
34946618 |
T |
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| Q |
218 |
atcgatacatgtgtttattatatttaatcattttgtttattcaaattgttggaaatcaagtgtg |
281 |
Q |
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| T |
34946617 |
atcgatacatgtgtttattatatttaatcattttgtttattcaaattgttggaaatcaagtgtg |
34946554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 34951286 - 34951184
Alignment:
| Q |
18 |
acaggttgtttcaggtttaacaggaaccaataacttgagttttgttggtgggaacatgtttaaatccatccctcaagctgatgctgtttcgctcaaggta |
117 |
Q |
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|||||||||||| ||||||||||| | || |||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||| |||||||||| |
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| T |
34951286 |
acaggttgtttcgggtttaacagggagcattaacttgagttttgttggtgggaacatgtttaaatctatccctcaagctgataccgttttgctcaaggta |
34951187 |
T |
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| Q |
118 |
tat |
120 |
Q |
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| T |
34951186 |
tat |
34951184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 8074682 - 8074617
Alignment:
| Q |
53 |
tgagttttgttggtgggaacatgtttaaatccatccctcaagctgatgctgtttcgctcaaggtat |
118 |
Q |
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|||||||||| || || ||||||||| |||| ||||||||||||||||| ||| |||||||||| |
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| T |
8074682 |
tgagttttgtaggcggaaacatgtttgaatctatccctcaagctgatgcaattttactcaaggtat |
8074617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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