View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6086_low_16 (Length: 261)

Name: NF6086_low_16
Description: NF6086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6086_low_16
NF6086_low_16
[»] chr3 (3 HSPs)
chr3 (11-244)||(3398553-3398786)
chr3 (11-71)||(3387132-3387192)
chr3 (10-83)||(16230699-16230772)
[»] scaffold0427 (1 HSPs)
scaffold0427 (19-244)||(4749-4974)
[»] chr8 (2 HSPs)
chr8 (19-225)||(24537347-24537553)
chr8 (39-88)||(26825922-26825971)
[»] chr6 (2 HSPs)
chr6 (19-167)||(24253082-24253230)
chr6 (19-167)||(22566943-22567091)
[»] scaffold0008 (1 HSPs)
scaffold0008 (10-96)||(233569-233655)
[»] chr5 (3 HSPs)
chr5 (40-240)||(24317927-24318126)
chr5 (31-97)||(20550084-20550150)
chr5 (31-82)||(24187822-24187873)
[»] chr2 (3 HSPs)
chr2 (12-55)||(29652685-29652728)
chr2 (94-140)||(11390304-11390350)
chr2 (94-140)||(11406965-11407011)


Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 244
Target Start/End: Original strand, 3398553 - 3398786
Alignment:
Q  11 ttattctcgttaggaaattatctcaaacttgcaattattgtgtgaaataggtaatcatgtaatcaaccaaaagtacacaatcaatggaaactaaagagga 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3398553 ttattctcgttaggaaattatctcaaacttgcaattattgtgtgaaataggtaatcatgtaatcaaccaaaagtacacaatcaatggaaactaaagagga 3398652  T
Q  111 aatggaagaacagaactaggagcacttgatctccttattcaagaaggttaaggtgacgaattcctatgtggagaagatgggaaaagagtcaggatacctt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3398653 aatggaagaacagaactaggagcacttgatctccttattcaagaaggttaaggtgacgaattcctatgtggagaagatgggaaaagagtcaggatacctt 3398752  T
Q  211 gcatttcagaaagaaattcatctaaagcgataag 244  Q
    ||||||||||||||||||||||||||||||||||    
T  3398753 gcatttcagaaagaaattcatctaaagcgataag 3398786  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 3387132 - 3387192
Alignment:
Q  11 ttattctcgttaggaaattatctcaaacttgcaattattgtgtgaaataggtaatcatgta 71  Q
    ||||||||||||||||||| |||| || ||| |||||||||||||||||||||||||||||    
T  3387132 ttattctcgttaggaaattttctcgaatttgaaattattgtgtgaaataggtaatcatgta 3387192  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 16230699 - 16230772
Alignment:
Q  10 attattctcgttaggaaattatctcaaacttgcaattattgtgtgaaataggtaatcatgtaatcaaccaaaag 83  Q
    |||||||| || || || || |||| ||||||||||||||||||||||||||||| |||| | |||||||||||    
T  16230699 attattcttgtcagaaatttttctcgaacttgcaattattgtgtgaaataggtaaccatggactcaaccaaaag 16230772  T

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Target: scaffold0427 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 19 - 244
Target Start/End: Original strand, 4749 - 4974
Alignment:
Q  19 gttaggaaattatctcaaacttgcaattattgtgtgaaataggtaatcatgtaatcaaccaaaagtacacaatcaatggaaactaaagaggaaatggaag 118  Q
    ||||||||||| |||| ||||||||| ||| |||||||||| || | |||| ||||||||||||   ||||| |||||   ||||||||||| |||||||    
T  4749 gttaggaaattttctcgaacttgcaactatggtgtgaaatatgttagcatggaatcaaccaaaaaggcacaagcaatgactactaaagaggagatggaag 4848  T
Q  119 aacagaactaggagcacttgatctccttattcaagaaggttaaggtgacgaattcctatgtggagaagatgggaaaagagtcaggataccttgcatttca 218  Q
    |||| || | ||||||||||||||||| ||||||||||||||||||||||| ||| | |||||||||| ||| ||||||||| |||||||| | |||| |    
T  4849 aacaaaattgggagcacttgatctcctcattcaagaaggttaaggtgacgacttcttttgtggagaagctggaaaaagagtcgggatacctcgaatttta 4948  T
Q  219 gaaagaaattcatctaaagcgataag 244  Q
    | ||||| |  || ||||||||||||    
T  4949 gcaagaagtagatataaagcgataag 4974  T

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Target: chr8 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 24537553 - 24537347
Alignment:
Q  19 gttaggaaattatctcaaacttgcaattattgtgtgaaataggtaatcatgtaatcaaccaaaagtacacaatcaatggaaactaaagaggaaatggaag 118  Q
    ||||||||||| |||| ||| ||||||||||||||||||||||||| |||| ||||||||||||  |||| |||||||  | || ||||||| ||||| |    
T  24537553 gttaggaaattttctcgaacctgcaattattgtgtgaaataggtaaccatggaatcaaccaaaaacacacgatcaatgacagctgaagaggagatggagg 24537454  T
Q  119 aacagaa-ctaggagcacttgatctccttattcaagaaggttaaggtgacgaattcctatgtggagaagatgggaaaagagtcaggataccttgcatttc 217  Q
    | || || ||| |||||  ||||| | ||| |||||||||| ||||||||   ||| | |||||||||| |||  |||||| |||| ||||||| |||||    
T  24537453 atcaaaatcta-gagcaagtgatcactttactcaagaaggtaaaggtgacttcttcttttgtggagaagttggagaaagagccagggtaccttgaatttc 24537355  T
Q  218 agaaagaa 225  Q
    || |||||    
T  24537354 agcaagaa 24537347  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 88
Target Start/End: Original strand, 26825922 - 26825971
Alignment:
Q  39 ttgcaattattgtgtgaaataggtaatcatgtaatcaaccaaaagtacac 88  Q
    ||||||||||||||||||||||||||  ||| ||||||||||||| ||||    
T  26825922 ttgcaattattgtgtgaaataggtaacaatggaatcaaccaaaaggacac 26825971  T

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Target: chr6 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 24253082 - 24253230
Alignment:
Q  19 gttaggaaattatctcaaacttgcaattattgtgtgaaataggtaatcatgtaatcaaccaaaagtacacaatcaatggaaactaaagaggaaatggaag 118  Q
    ||||||||||| |||| ||||||  |||||||||||||||||||||||||| || ||||||||      |||| ||||| ||| ||||||||||  | ||    
T  24253082 gttaggaaattttctcgaacttgtgattattgtgtgaaataggtaatcatggaagcaaccaaagacgagcaattaatggcaacaaaagaggaaactggag 24253181  T
Q  119 aacagaactaggagcacttgatctccttattcaagaaggttaaggtgac 167  Q
    ||||| | | |||||||||||| ||  ||||||||||||| ||||||||    
T  24253182 aacaggaatgggagcacttgatatcactattcaagaaggtgaaggtgac 24253230  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 22566943 - 22567091
Alignment:
Q  19 gttaggaaattatctcaaacttgcaattattgtgtgaaataggtaatcatgtaatcaaccaaaagtacacaatcaatggaaactaaagaggaaatggaag 118  Q
    ||||||||||| |||| | ||||  ||||||||||||||||||||||||   || |||| |||    |||||   |||| ||||||||||||||  || |    
T  22566943 gttaggaaattttctcgagcttgtgattattgtgtgaaataggtaatcacagaagcaactaaagacgcacaagtgatggcaactaaagaggaaactgagg 22567042  T
Q  119 aacagaactaggagcacttgatctccttattcaagaaggttaaggtgac 167  Q
    |||| ||||  |||||||||||||| |||||||||||||| | ||||||    
T  22567043 aacaaaactgagagcacttgatctcattattcaagaaggtgacggtgac 22567091  T

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Target: scaffold0008 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 233655 - 233569
Alignment:
Q  10 attattctcgttaggaaattatctcaaacttgcaattattgtgtgaaataggtaatcatgtaatcaaccaaaagtacacaatcaatg 96  Q
    |||||||| ||||| || || |||| |||||||||||||||| ||||||||||||||||| | | ||| ||||| |||||| |||||    
T  233655 attattcttgttagaaatttttctcgaacttgcaattattgtctgaaataggtaatcatggactgaactaaaagcacacaaacaatg 233569  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 240
Target Start/End: Original strand, 24317927 - 24318126
Alignment:
Q  40 tgcaattattgtgtgaaataggtaatcatgtaatcaaccaaaagtacacaatcaatggaaactaaagaggaaatggaagaacagaactaggagcacttga 139  Q
    |||||||||||||||||| |||||| |||| ||||||||||||| ||| ||||||||| |||| || ||||    |||||||| ||   ||||||  |||    
T  24317927 tgcaattattgtgtgaaa-aggtaaccatggaatcaaccaaaagcacataatcaatggcaacttaaaaggactcagaagaacataatctggagcaactga 24318025  T
Q  140 tctccttattcaagaaggttaaggtgacgaattcctatgtggagaagatgggaaaagagtcaggataccttgcatttcagaaagaaattcatctaaagcg 239  Q
    ||   ||| | |||||||||||||| || | ||  | |||||||||  |||  |||||||| |||||||| | ||||||| ||||| |  ||||||||||    
T  24318026 tcaatttactaaagaaggttaaggttactagttgttttgtggagaatctggagaaagagtcgggatacctcgaatttcagcaagaagtagatctaaagcg 24318125  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 97
Target Start/End: Original strand, 20550084 - 20550150
Alignment:
Q  31 tctcaaacttgcaattattgtgtgaaataggtaatcatgtaatcaaccaaaagtacacaatcaatgg 97  Q
    |||| ||||| ||||||||||||||||||||||| |||| | ||||||||||| ||| || ||||||    
T  20550084 tctcgaacttacaattattgtgtgaaataggtaaccatggactcaaccaaaagcacataaacaatgg 20550150  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 31 - 82
Target Start/End: Original strand, 24187822 - 24187873
Alignment:
Q  31 tctcaaacttgcaattattgtgtgaaataggtaatcatgtaatcaaccaaaa 82  Q
    |||| |||||| |||||||||||||||||||||| |||  ||||||||||||    
T  24187822 tctcgaacttgaaattattgtgtgaaataggtaaccattgaatcaaccaaaa 24187873  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 55
Target Start/End: Original strand, 29652685 - 29652728
Alignment:
Q  12 tattctcgttaggaaattatctcaaacttgcaattattgtgtga 55  Q
    |||||| ||||||||||| |||| ||||||||||||||||||||    
T  29652685 tattcttgttaggaaattttctcgaacttgcaattattgtgtga 29652728  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 11390350 - 11390304
Alignment:
Q  94 atggaaactaaagaggaaatggaagaacagaactaggagcacttgat 140  Q
    |||| |||||| |||||||| ||||||||||||| ||||||||||||    
T  11390350 atggcaactaacgaggaaattgaagaacagaactgggagcacttgat 11390304  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 11407011 - 11406965
Alignment:
Q  94 atggaaactaaagaggaaatggaagaacagaactaggagcacttgat 140  Q
    |||| |||||| |||||||| ||||||||||||| ||||||||||||    
T  11407011 atggcaactaacgaggaaattgaagaacagaactgggagcacttgat 11406965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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