View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6086_low_20 (Length: 252)
Name: NF6086_low_20
Description: NF6086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6086_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 18 - 246
Target Start/End: Original strand, 38920881 - 38921127
Alignment:
| Q |
18 |
ctatgcagccatctggatgcttgtttaagtagattatagagatagacagacaatgacattaagctaagctggtggtacccatagaaactaagattttaat |
117 |
Q |
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| T |
38920881 |
ctatgcagccatctggatgcttgtttaagtagattatagagatagacagacaatgacattaagctaagctggtggtacccatagaaactaagattttaat |
38920980 |
T |
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| Q |
118 |
gcatgtttcagtatgtaaaaaattgtggatttttaagtgcactattggtaaaccaatattagatatccgtt------------------agtaatgaggc |
199 |
Q |
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| T |
38920981 |
gcatgtttcagtatgtaaaaaattgtggatttttaagtgcactattggtaaaccaatattagatatccgtttatcgctaagcactggtgagtaatgaggc |
38921080 |
T |
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| Q |
200 |
tttaatgaacatgtttttatatggaaactccttttgttgatgatgtc |
246 |
Q |
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| T |
38921081 |
tttaatgaacatgtttttatatggaaactccttttgttgaagatgtc |
38921127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 131
Target Start/End: Original strand, 10544765 - 10544869
Alignment:
| Q |
27 |
catctggatgcttgtttaagtagattatagagatagacagacaatgacattaagctaagctggtggtacccatagaaactaagattttaatgcatgtttc |
126 |
Q |
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| T |
10544765 |
catctggatgcatgttttagtaggttatagagatagacaggcagtggcattaagctaagctggtggtacccataggaactaaaattttaatgcttgtttg |
10544864 |
T |
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| Q |
127 |
agtat |
131 |
Q |
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||||| |
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| T |
10544865 |
agtat |
10544869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 246
Target Start/End: Original strand, 10545135 - 10545188
Alignment:
| Q |
193 |
atgaggctttaatgaacatgtttttatatggaaactccttttgttgatgatgtc |
246 |
Q |
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| T |
10545135 |
atgaggctttactaaacatatttttatatggaaactccttttgttgaagatgtc |
10545188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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