View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6086_low_22 (Length: 238)

Name: NF6086_low_22
Description: NF6086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6086_low_22
NF6086_low_22
[»] chr8 (5 HSPs)
chr8 (96-188)||(11990091-11990183)
chr8 (116-199)||(11997648-11997731)
chr8 (115-199)||(12009487-12009571)
chr8 (111-169)||(12003984-12004042)
chr8 (15-55)||(11991260-11991300)


Alignment Details
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 96 - 188
Target Start/End: Complemental strand, 11990183 - 11990091
Alignment:
Q  96 tgtttaatttgtacatattgtgtaggttaacaatgctgggattagcggagttgaaattaaagacagtgatttattcacttctgcaatcattac 188  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||| || ||||||||    
T  11990183 tgtttaatttgtacatattgtgtaggttaacaatgcagggattggcggagttgaaattaaagatagtgatttattcacttcagccatcattac 11990091  T

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Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 11997731 - 11997648
Alignment:
Q  116 tgtaggttaacaatgctgggattagcggagttgaaattaaagacagtgatttattcacttctgcaatcattactagtggggtta 199  Q
    |||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||| || ||||||||||    
T  11997731 tgtaggttaacaatgctgggattagcggggttgaagttaaagaccgtgatttattcacttctgcaatcatgacgagtggggtta 11997648  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 12009571 - 12009487
Alignment:
Q  115 gtgtaggttaacaatgctgggattagcggagttgaaattaaagacagtgatttattcacttctgcaatcattactagtggggtta 199  Q
    ||||||||||||||||| |||||||||||||||||| |||| |||| |||||||||| |||| ||||||||||| | ||||||||    
T  12009571 gtgtaggttaacaatgccgggattagcggagttgaagttaacgacactgatttattctcttcagcaatcattacgaatggggtta 12009487  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 12004042 - 12003984
Alignment:
Q  111 tattgtgtaggttaacaatgctgggattagcggagttgaaattaaagacagtgatttat 169  Q
    |||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  12004042 tattttgtaggttaacaatgctgggattaacggaattgaaattaaagacagtgatttat 12003984  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 11991300 - 11991260
Alignment:
Q  15 atgaaaacaagataacatgaggttgaggtgtaggataggag 55  Q
    ||||||||||||||||||||||||||||  || ||||||||    
T  11991300 atgaaaacaagataacatgaggttgagggataagataggag 11991260  T

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