View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6086_low_26 (Length: 227)
Name: NF6086_low_26
Description: NF6086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6086_low_26 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 42604226 - 42604000
Alignment:
| Q |
1 |
tcatcaatatgtaaagaagagctcctattcacattataaagaaccttcgggtttgtaacgattgtcatgcagtcaccaaactcctctcagctatctatga |
100 |
Q |
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| T |
42604226 |
tcatcaatatggaaagaagagctcctattcgcattataaagaaccttcgggtttgtaacgattgtcatgcagtcaccaaactcctctcagctatctatga |
42604127 |
T |
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| Q |
101 |
tcgtgaaatcatagtgagagataacagccgctttcatcatttcaaaaatggatcatgttcttgcaatgacttttggtgacatgttgcagatctttgatga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
42604126 |
tcgtgaaatcatagtgagagataacagccgctttcatcatttcaaaaatggatcatgttcttgcaatgacttttggtgacacgttgcagatctttgatga |
42604027 |
T |
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| Q |
201 |
ggtatatcagtttaaaaaattgttaca |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
42604026 |
ggtatatcagtttaaaaaattgttaca |
42604000 |
T |
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