View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6086_low_3 (Length: 660)
Name: NF6086_low_3
Description: NF6086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6086_low_3 |
 | |
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| [»] chr6 (5 HSPs) |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 558; Significance: 0; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 5 - 660
Target Start/End: Original strand, 5920713 - 5921367
Alignment:
| Q |
5 |
ggaggagcagagatgctaatagaaacaaaaggagtgacttggacatggttggtggtggcatttgaagtagaagggagagatgatgaggaaaccaaactag |
104 |
Q |
| |
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|||| ||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
5920713 |
ggagtagcagagatgctagtagaaacaaaaggagtgacttggatatggttggtggtggaatttgaagtagaagggagagatgatgaggaaaccaaacttg |
5920812 |
T |
|
| Q |
105 |
catgttgtagcaa-ggaaacaagttgagtatattgctctggagacaaacaagtaccagaacctgtagagccccccaaaccatgatccaatgcaccatttt |
203 |
Q |
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| ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5920813 |
cctgttgtagcaaaggaaacaagttgagtatattgctctggagacaaacaggtaccagaacctgtagagccccccaaaccatgatccaatgcaccatttt |
5920912 |
T |
|
| Q |
204 |
catcaaggatctcatgagtagctgcatttactctagattgttgcttaggaaaactagggtggccatgtttttgataacaaaaatcaactgtgtgattagt |
303 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
5920913 |
catcaaggatctcatgagtagctgcatttcctcttgattgttgcttaggaaaactagggtagccatgtttttgataacaaaaatcaattgtgtgattagt |
5921012 |
T |
|
| Q |
304 |
cttgtgacaaaaggcgcaatacctagtaggtttttgagaatgaacaaaagagaacctttaccacgtcctcgtgatttcttaacctcagaagcattcaatt |
403 |
Q |
| |
|
|||||||||||||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||| |
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|
| T |
5921013 |
cttgtgacaaaaggtgcaatacgtagtaggtttttgagaatgaacaaaaga--acctttaccacgtccttgtgatttcttaacctcataagcattcaatt |
5921110 |
T |
|
| Q |
404 |
gtatgttactatcatctgaagcagagactgaaattggtaaagaattattgctttcttcttgcaccacaagagagtaaaccttcttgagaggaggaagagg |
503 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5921111 |
gtatgttactatcatctgaagcagtgactgaaattggtaaagaattattgttttcttcttgcaccacaagagagtaaaccttcttgagcggaggaagagg |
5921210 |
T |
|
| Q |
504 |
atcaagaagaagaacttgagtcttaacaaccccaaaattatcattcaaactagtcaaaaactgcatgatttgatcctcagttctgtaaatcttagcaacc |
603 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5921211 |
atcaagaagaagaacttgagtcttaacaaccccaaaattatcattcaaaccagtcaaaaactgcatgatttgatcctcagttctgtaaatcttagcaacc |
5921310 |
T |
|
| Q |
604 |
ctagtagcatcacaatggcaagcatgaacacaaatacaagatggaattggtctatgt |
660 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
5921311 |
ctagtagcatcacaacggcaagcatgaacacaaatacaagatggaattggtctatgt |
5921367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 95 - 152
Target Start/End: Complemental strand, 26968778 - 26968721
Alignment:
| Q |
95 |
accaaactagcatgttgtagcaaggaaacaagttgagtatattgctctggagacaaac |
152 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||| |||||||||| |||| |||| |
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|
| T |
26968778 |
accaaactagcctgttgtagcaaggaaactagttgagcatattgctcttgagataaac |
26968721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 495 - 636
Target Start/End: Complemental strand, 14813625 - 14813484
Alignment:
| Q |
495 |
aggaagaggatcaagaagaagaacttgagtcttaacaaccccaaaattatcattcaaactagtcaaaaactgcatgatttgatcctcagttctgtaaatc |
594 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||| ||| | ||||||||| | || | ||| ||||| || ||||||||| |||| | |||| |
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|
| T |
14813625 |
aggaagaggatcaaggagaagaacttgagttctaacaacagaaaattgatcattcaatcctgtaagaaattgcataatctgatcctcatttctatgaatc |
14813526 |
T |
|
| Q |
595 |
ttagcaaccctagtagcatcacaatggcaagcatgaacacaa |
636 |
Q |
| |
|
|||||||| ||| ||| ||||| | |||| |||||||||| |
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|
| T |
14813525 |
ttagcaactttagatgcagcacaacgacaaggatgaacacaa |
14813484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 447 - 533
Target Start/End: Complemental strand, 6341059 - 6340973
Alignment:
| Q |
447 |
attattgctttcttcttgcaccacaagagagtaaaccttcttgagaggaggaagaggatcaagaagaagaacttgagtcttaacaac |
533 |
Q |
| |
|
|||||| ||||||||||| || || | ||| |||||||| |||| | |||||| ||||| | |||||||||||||||||| ||||| |
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|
| T |
6341059 |
attattactttcttcttgaacaaccatagaataaaccttgttgattgaaggaagtggatccataagaagaacttgagtcttcacaac |
6340973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 266 - 308
Target Start/End: Complemental strand, 17118969 - 17118927
Alignment:
| Q |
266 |
ccatgtttttgataacaaaaatcaactgtgtgattagtcttgt |
308 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| |||||| |
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|
| T |
17118969 |
ccatgtttttgataacaaaaatcaacagtatgattattcttgt |
17118927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 422; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 5 - 660
Target Start/End: Original strand, 20325022 - 20325669
Alignment:
| Q |
5 |
ggaggagcagagatgctaatagaaacaaaaggagtgacttggacatggttggtggtggcatttgaagtagaagggagagatgatgaggaaaccaaactag |
104 |
Q |
| |
|
|||| |||||| ||| || | ||||||||||||||| ||||||||| |||||||| ||||||||||||| ||| ||||||||||||||| |||||||| |
|
|
| T |
20325022 |
ggagaagcagaaatgttattggaaacaaaaggagtggtttggacatgattggtggtagcatttgaagtaggaggaggagatgatgaggaaatcaaactag |
20325121 |
T |
|
| Q |
105 |
catgttgtagcaaggaaacaagttgagtatattgctctggagacaaacaagtaccagaacctgtagagccccccaaaccatgatccaatgcaccattttc |
204 |
Q |
| |
|
| || || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20325122 |
cctgctgcagcaaggaaacaagttgagtatattgctctggagacaaactagtaccagaacctgtagagccccccaaaccatgatccaatgcaccattttc |
20325221 |
T |
|
| Q |
205 |
atcaaggatctcatgagtagctgcatttactctagattgttgcttaggaaaactagggtggccatgtttttgataacaaaaatcaactgtgtgattagtc |
304 |
Q |
| |
|
|||| |||||||||||| ||| | | ||| ||||||||||||||||||||||||| || |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
20325222 |
atcagggatctcatgagaagcag---tcactttagattgttgcttaggaaaactaggatgaccatgtagttgataacaaaaatcaactgtgtgattagtt |
20325318 |
T |
|
| Q |
305 |
ttgtgacaaaaggcgcaatacctagtaggtttttgagaatgaacaaaagagaacctttaccacgtcctcgtgatttcttaacctcagaagcattcaattg |
404 |
Q |
| |
|
||||||||||| | ||| |||||| ||||||||||||||| ||||||| ||||||||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
20325319 |
ttgtgacaaaaagtgcagtacctattaggtttttgagaattaacaaaa-----cctttaccacgtccttgggatttcttaacctcagaagcattcaattg |
20325413 |
T |
|
| Q |
405 |
tatgttactatcatctgaagcagagactgaaattggtaaagaattattgctttcttcttgcaccacaagagagtaaaccttcttgagaggaggaagagga |
504 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| ||||| || || ||||| ||||||||| |
|
|
| T |
20325414 |
tatgttactatcatctgaagcagagattgaaattggtaaagagttattgctttcttcttgcaccacaagagaataaactttattaagaggtggaagagga |
20325513 |
T |
|
| Q |
505 |
tcaagaagaagaacttgagtcttaacaaccccaaaattatcattcaaactagtcaaaaactgcatgatttgatcctcagttctgtaaatcttagcaaccc |
604 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
20325514 |
ttaagaagaagaacttgagtcttaacaactccaaaattatcattcaaaccagtcaaaaactgcataatttgatcctcagttctgtaaatcttagccaccc |
20325613 |
T |
|
| Q |
605 |
tagtagcatcacaatggcaagcatgaacacaaatacaagatggaattggtctatgt |
660 |
Q |
| |
|
|||||||||||||| |||||||||||||||| | |||||||||||| ||||||||| |
|
|
| T |
20325614 |
tagtagcatcacaacggcaagcatgaacacacacacaagatggaataggtctatgt |
20325669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 443 - 602
Target Start/End: Complemental strand, 11923141 - 11922982
Alignment:
| Q |
443 |
aagaattattgctttcttcttgcaccacaagagagtaaaccttcttgagaggaggaagaggatcaagaagaagaacttgagtcttaacaaccccaaaatt |
542 |
Q |
| |
|
|||| |||||||||||||||| || ||||| |||||||||| || || | ||||| |||||||||||| | ||||||||| || | || ||| | |
|
|
| T |
11923141 |
aagagttattgctttcttcttaaacaacaaggaagtaaaccttgttcagggaaggaataggatcaagaagcaaaacttgagtttttaatacagaaaattg |
11923042 |
T |
|
| Q |
543 |
atcattcaaactagtcaaaaactgcatgatttgatcctcagttctgtaaatcttagcaac |
602 |
Q |
| |
|
||||||||| | |||| ||| |||||||||||||| | |||| |||||||||| ||||| |
|
|
| T |
11923041 |
atcattcaagcctgtcagaaattgcatgatttgatctttagttatgtaaatcttggcaac |
11922982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 447 - 533
Target Start/End: Original strand, 16992268 - 16992354
Alignment:
| Q |
447 |
attattgctttcttcttgcaccacaagagagtaaaccttcttgagaggaggaagaggatcaagaagaagaacttgagtcttaacaac |
533 |
Q |
| |
|
|||||| ||||||||||| || || | ||| |||||||| |||| | |||||| ||||| | |||||||||||||||||| ||||| |
|
|
| T |
16992268 |
attattactttcttcttgaacaaccatagaataaaccttgttgattgaaggaagtggatccataagaagaacttgagtcttcacaac |
16992354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 544 - 601
Target Start/End: Complemental strand, 25571683 - 25571626
Alignment:
| Q |
544 |
tcattcaaactagtcaaaaactgcatgatttgatcctcagttctgtaaatcttagcaa |
601 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||| |||||||||| |||||||| |
|
|
| T |
25571683 |
tcattcaaaccagtcaaaaactgaatgatttgatccttggttctgtaaagcttagcaa |
25571626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 443 - 641
Target Start/End: Complemental strand, 22642215 - 22642017
Alignment:
| Q |
443 |
aagaattattgctttcttcttgcaccacaagagagtaaaccttcttgagaggaggaagaggatcaagaagaagaacttgagtcttaacaaccccaaaatt |
542 |
Q |
| |
|
||||||||||||| |||||||| | ||| | ||| |||||||| || | || ||| ||||||||||| | |||| |||||||| || || || | |
|
|
| T |
22642215 |
aagaattattgctctcttcttgaatcaccatagaataaaccttattcaaagaaggtagaggatcaagcaatagaatctgagtctttaccacagagaattg |
22642116 |
T |
|
| Q |
543 |
atcattcaaactagtcaaaaactgcatgatttgatcctcagttctgtaaatcttagcaaccctagtagcatcacaatggcaagcatgaacacaaataca |
641 |
Q |
| |
|
||||||||| | ||| ||||| ||||| ||||||||||||||||| | | |||| ||||| | |||||| ||||| |||| | ||| ||||||||||| |
|
|
| T |
22642115 |
atcattcaagccagttaaaaattgcattatttgatcctcagttctatgagtcttggcaacacgagtagcttcacaccggcatggatgcacacaaataca |
22642017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 495 - 636
Target Start/End: Complemental strand, 5238167 - 5238026
Alignment:
| Q |
495 |
aggaagaggatcaagaagaagaacttgagtcttaacaaccccaaaattatcattcaaactagtcaaaaactgcatgatttgatcctcagttctgtaaatc |
594 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||| ||| | ||||||||| | || | ||| ||||| || ||||||||| |||| | |||| |
|
|
| T |
5238167 |
aggaagaggatcaaggagaagaacttgagttctaacaacagaaaattgatcattcaatcctgtaagaaattgcataatctgatcctcatttctatgaatc |
5238068 |
T |
|
| Q |
595 |
ttagcaaccctagtagcatcacaatggcaagcatgaacacaa |
636 |
Q |
| |
|
|||||||| ||| ||| ||||| | |||| |||||||||| |
|
|
| T |
5238067 |
ttagcaactttagatgcagcacaacgacaaggatgaacacaa |
5238026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 447 - 533
Target Start/End: Original strand, 20485103 - 20485189
Alignment:
| Q |
447 |
attattgctttcttcttgcaccacaagagagtaaaccttcttgagaggaggaagaggatcaagaagaagaacttgagtcttaacaac |
533 |
Q |
| |
|
|||||| ||||||||||| || || | ||| |||||||| |||| | |||||| ||||| | |||||||||||||||||| ||||| |
|
|
| T |
20485103 |
attattactttcttcttgaacaaccatagaataaaccttgttgattgaaggaagtggatccataagaagaacttgagtcttcacaac |
20485189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 447 - 533
Target Start/End: Complemental strand, 28016088 - 28016002
Alignment:
| Q |
447 |
attattgctttcttcttgcaccacaagagagtaaaccttcttgagaggaggaagaggatcaagaagaagaacttgagtcttaacaac |
533 |
Q |
| |
|
|||||| ||||||||||| || || | ||| |||||||| |||| | |||||| ||||| | |||||||||||||||||| ||||| |
|
|
| T |
28016088 |
attattactttcttcttgaacaaccatagaataaaccttgttgattgaaggaagtggatccataagaagaacttgagtcttcacaac |
28016002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 15756259 - 15756210
Alignment:
| Q |
266 |
ccatgtttttgataacaaaaatcaactgtgtgattagtcttgtgacaaaa |
315 |
Q |
| |
|
|||||||||||||| ||||| || | ||||||||||||||||||||||| |
|
|
| T |
15756259 |
ccatgtttttgatagcaaaattccaaagtgtgattagtcttgtgacaaaa |
15756210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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