View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6086_low_4 (Length: 579)
Name: NF6086_low_4
Description: NF6086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6086_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 462; Significance: 0; HSPs: 9)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 462; E-Value: 0
Query Start/End: Original strand, 14 - 564
Target Start/End: Original strand, 53514509 - 53515054
Alignment:
| Q |
14 |
aggcaggggatatatcaaaagtaatgcattaccactggacacatttctcaagaaaatgtacatgaaaaagaaaatgatctacaattattggaaccaatac |
113 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53514509 |
aggcaggggatatatcaaaagta-tgcattaccactggacacatttctcaagaaaatgtacatgaaaaagaaaatgatctacaattattggaaccaatac |
53514607 |
T |
|
| Q |
114 |
nnnnnnnncacaagcataggcaaacctgctttctttaacctctccagttacaccatcgacaacaagtgatcttgccatgaaaggcttggcaagattgatc |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53514608 |
aaaaaaaacacaagcataggcaaacctgctttctttaacctctccagttacgccatcgacaacaagtgatcttgccatgaaaggcttggcaagattgatc |
53514707 |
T |
|
| Q |
214 |
aaatgctcacattcttcttttgactgttcaaaatgataggcaaaatggaggttttatataatacaatatagattccaacagtttaagatctctctcattt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
53514708 |
aaatgctcacattcttcttttgactgttcaaaatgataggcaaaatggaggtttta----atacaatatagattccaacagtttaagatctctctcattt |
53514803 |
T |
|
| Q |
314 |
nnnnnnnntataaaaagaaagatctccattcaaactctggagtctttcggaaagtttaagtttcctgcaatctgaatatttcgtgtatgaatgtgaatac |
413 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53514804 |
aaaaaaaatataaaaagaaagatctccactcaaactctggagtctttcggaaagtttaagtttcctgcaatctgaatatttcgtgtatgaatgtgaatac |
53514903 |
T |
|
| Q |
414 |
tagattttcttttatcactaaccaccatgaaaaacctctatcgtcatataatttaattttccatgagcctagcctatgcttacagacattacaggtacaa |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53514904 |
tagattttcttttatcactaaccaccatgaaaaacctctattgtcatataatttaattttccatgagcctagcctatgcttacagacattacaggtacaa |
53515003 |
T |
|
| Q |
514 |
ttatatgcagctctctattcaatacttgaagaactatattatgatacatgt |
564 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
53515004 |
ttatatgcagctctctattcaatacttgaagaactatattgtgatacatgt |
53515054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 133 - 548
Target Start/End: Original strand, 53510938 - 53511337
Alignment:
| Q |
133 |
gcaaacctgctttctttaacctctccagttacaccatcgacaacaagtgatcttgccatgaaaggcttggcaagattgatcaaatgctcacattcttctt |
232 |
Q |
| |
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||||||||||||||| || ||| |||||| | ||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53510938 |
gcaaacctgctttctctaccctttccagtcaagccatcaacaacaagcgatcttgtcatgaaaggcttggcaagattgatcaaatgctcacattcttctt |
53511037 |
T |
|
| Q |
233 |
ttgactgttcaaaatgataggcaaaatggaggttttatataatacaatatagattccaacagtttaagatctctctcatttnnnnnnnntataaaaagaa |
332 |
Q |
| |
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||||||||||||||||||||| ||| |||| ||||| |||||||||| ||||||||||||||||||||||||||||| |||| | |
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| T |
53511038 |
ttgactgttcaaaatgataggaaaagtggacatttta----atacaatataaattccaacagtttaagatctctctcattt------------aaaacta |
53511121 |
T |
|
| Q |
333 |
agatctccattcaaactctggagtctttcggaaagtttaagtttcctgcaatctgaatatttcgtgtatgaatgtgaatactagattttcttttatcact |
432 |
Q |
| |
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||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||| | |
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| T |
53511122 |
agatctccactcaaactctggagtctttcagaaagttcaagtttcctgcaatctgaatattccatgtatgaatatgaatactagattttcttttatcatt |
53511221 |
T |
|
| Q |
433 |
aaccaccatgaaaaacctctatcgtcatataatttaattttccatgagcctagcctatgcttacagacattacaggtacaattatatgcagctctctatt |
532 |
Q |
| |
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||| ||||||||||||||||||| | |||| ||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||| ||||||| |
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| T |
53511222 |
aactaccatgaaaaacctctatctttgtatagtttaattttccatgaccctagcctatgcttacagacattacaagtgcaattgtatgcagaactctatt |
53511321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 122 - 262
Target Start/End: Original strand, 53525047 - 53525187
Alignment:
| Q |
122 |
cacaagcataggcaaacctgctttctttaacctctccagttacaccatcgacaacaagtgatcttgccatgaaaggcttggcaagattgatcaaatgctc |
221 |
Q |
| |
|
|||||||||||||||||||| || | || ||| ||| ||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |
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|
| T |
53525047 |
cacaagcataggcaaacctgtttagtataccctgtccggttacgccatcgacaacaagtgacctttgcatgaaaggcttggcaagattgatcaaatgctc |
53525146 |
T |
|
| Q |
222 |
acattcttcttttgactgttcaaaatgataggcaaaatgga |
262 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||| |
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| T |
53525147 |
acattcttcttttgactgttcaaaatgataggcagaatgga |
53525187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 53548554 - 53548837
Alignment:
| Q |
18 |
aggggatatatcaaaagtaatgcattaccactggacaca--tttctcaagaaaatgtacatg------aaaaagaaaatgatctacaattattggaacca |
109 |
Q |
| |
|
|||||||||||| | ||||||||||||||||| ||||| | ||||||||||| || ||| ||||| ||||||||||||||||||||||||| |
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|
| T |
53548554 |
aggggatatatctagagtaatgcattaccactagacactagtctctcaagaaaaggtttatggaaagaaaaaaaaaaatgatctacaattattggaaccg |
53548653 |
T |
|
| Q |
110 |
atacnnnnnnnncacaagcataggcaaacctgctttctttaacctctccagttacaccatcgacaacaagtgatcttgccatgaaaggcttggcaagatt |
209 |
Q |
| |
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|||| |||||||| ||||||||||||||||| || || |||||| | |||||| ||| |||| |||||| |||||||||||| ||||| |
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| T |
53548654 |
atacaaaaaaa-cacaagcaaaggcaaacctgctttctgtactctttccagtcttgctatcgacgacacttgattttgccaagaaaggcttggccagatt |
53548752 |
T |
|
| Q |
210 |
gatcaaatgctcacattcttcttttgactgttcaaaatgataggcaaaatggaggttttatataatacaatatagattccaacagttta |
298 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||| |||| | ||| || ||| |||||||||||| |||||||||||||| |
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| T |
53548753 |
gatcaaatgctcacattcttctttggactgttcacaatggtaggaagaattgacattt----taatacaatataaattccaacagttta |
53548837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 20197301 - 20197384
Alignment:
| Q |
179 |
gtgatcttgccatgaaaggcttggcaagattgatcaaatgctcacattcttcttttgactgttcaaaatgataggcaaaatgga |
262 |
Q |
| |
|
|||||||| ||| | |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
20197301 |
gtgatctttccaagtaaggcttgccaagtttgatcaaatgctcacattcttcttttgactgttcaaaatgataggcataatgga |
20197384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 433 - 519
Target Start/End: Original strand, 53548992 - 53549078
Alignment:
| Q |
433 |
aaccaccatgaaaaacctctatcgtcatataatttaattttccatgagcctagcctatgcttacagacattacaggtacaattatat |
519 |
Q |
| |
|
||||||| ||| |||||||||| ||||| |||||| ||||||||||||||||||||||||||||||| ||||| || ||||||||| |
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|
| T |
53548992 |
aaccacccagaacaacctctatcttcatacaatttagttttccatgagcctagcctatgcttacagactttacaagtgcaattatat |
53549078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 366 - 519
Target Start/End: Original strand, 53525323 - 53525469
Alignment:
| Q |
366 |
agtttaagtttcctgcaatctgaatatttcgtgtatgaatgtgaatactagattttcttttatcactaaccaccatgaaaaacctctatcgtcatataat |
465 |
Q |
| |
|
|||| |||||| |||||||||||||||| | ||||||||| |||||||||||||||| | |||||||| ||||| |||||||| || || ||| |
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| T |
53525323 |
agttcaagtttactgcaatctgaatattccatgtatgaatac-----ctagattttcttttat-attaaccacccagaaaaccctctatcttcgtacaat |
53525416 |
T |
|
| Q |
466 |
ttaattttccatgagcctagcctatgcttacagacattacaggtacaattatat |
519 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||| || |||||||| |
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|
| T |
53525417 |
ttaatttcccatgagcctagcctatgcttaca-acattacaagtggaattatat |
53525469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 53510860 - 53510929
Alignment:
| Q |
16 |
gcaggggatatatcaaaagtaatgcattaccact-ggacac-att-tctcaagaaaatgtacatgaaaaa |
82 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||| ||| |||||||||||||||||||||||| |
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|
| T |
53510860 |
gcaggggatatattaaaagtaatgcattaccactaagacactattctctcaagaaaatgtacatgaaaaa |
53510929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 457 - 506
Target Start/End: Original strand, 20197525 - 20197573
Alignment:
| Q |
457 |
tcatataatttaattttccatgagcctagcctatgcttacagacattaca |
506 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||| |||||||| |
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|
| T |
20197525 |
tcatataacttaattttccatgagcatagcctatgcttaca-acattaca |
20197573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 198 - 294
Target Start/End: Complemental strand, 16608492 - 16608400
Alignment:
| Q |
198 |
cttggcaagattgatcaaatgctcacattcttcttttgactgttcaaaatgataggcaaaatggaggttttatataatacaatatagattccaacag |
294 |
Q |
| |
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|||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||| ||| || ||| |||||||||||| |||||||||| |
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| T |
16608492 |
cttggcaagattgatcaaatgctcacattcttattttgattgtacaaaatgataggcataatagacattt----taatacaatataaattccaacag |
16608400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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