View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6086_low_5 (Length: 543)
Name: NF6086_low_5
Description: NF6086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6086_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 525
Target Start/End: Original strand, 23070253 - 23070785
Alignment:
| Q |
1 |
tgaggaggagcacagacatgttcattgttatgtatatccaacttttgatttaacacttcaactttatatttaaaagactgaaaaagtctagtttgcctca |
100 |
Q |
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|||| |||| |||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
23070253 |
tgagaaggaccacacatatgttcattgttatgtatatccaacttttgatttaacacttcaactttatatttaagagaccgaaaaagtctagtttgcctca |
23070352 |
T |
|
| Q |
101 |
gctacatttttgtttttaatcctttatgacaaaagaaannnnnnncaatctgaatttaacgataatta-------aa-----------aaagaaatgcta |
182 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| || || ||||||||| |
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| T |
23070353 |
gctacatttttgtttttaatcctttatgacgaaagaaatttttttcaatctggatttaacgataattaggcatataaacattaggtcgaaggaaatgcta |
23070452 |
T |
|
| Q |
183 |
acaaatatccttaggatacttaataatataacaaaatatttaagcactataaattagagggccgactcgagcttgatgctcttgctaatggacggtcata |
282 |
Q |
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| T |
23070453 |
acaagtatcctta---------ataatataacaaaatatttaagcactataaattagagggccgactcgagcttgatgctcttgctaatggacggtcata |
23070543 |
T |
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| Q |
283 |
attgcatacggtaatggttgtctaaaaaattcaggnnnnnnnnctatatcatataataagtgggtcattgctcttttggcctcatatttgctcattatct |
382 |
Q |
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| T |
23070544 |
attgcatacggtaatggttgtctaaaaaattcaggttttttt--tatatcatataataagtgggtcattgctcttttggccccatatttgctcattatct |
23070641 |
T |
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| Q |
383 |
tgaaaaacaatcttcaaaagttatcaatcgaaattttt-nnnnnnnnnnnnntgtcgttcgagagtaatctctccaaaaacaatctttaaaagttatcac |
481 |
Q |
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| T |
23070642 |
tgaaaaacaatcttcaaaagttatcaatcgaaatttttaaaaaacaaaaaaatgtcgttcgagagtaatctctccaaaaacaatatttgaaagttatcac |
23070741 |
T |
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| Q |
482 |
ttgaagtctctaataagtgctcggtttgaatctgcttactatat |
525 |
Q |
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| T |
23070742 |
tcgaagtctctaataagtgctcggtttgaatctgcttactatat |
23070785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 252 - 315
Target Start/End: Original strand, 23070831 - 23070894
Alignment:
| Q |
252 |
agcttgatgctcttgctaatggacggtcataattgcatacggtaatggttgtctaaaaaattca |
315 |
Q |
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| T |
23070831 |
agcttgatgctcttactaatggacggcaatgattgcatacggtagtggttgactaaaaaattca |
23070894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 367 - 407
Target Start/End: Original strand, 36848235 - 36848275
Alignment:
| Q |
367 |
tatttgctcattatcttgaaaaacaatcttcaaaagttatc |
407 |
Q |
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| T |
36848235 |
tatttgctctttatcctgaaaaacaattttcaaaagttatc |
36848275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 349 - 407
Target Start/End: Complemental strand, 36940322 - 36940264
Alignment:
| Q |
349 |
attgctcttttggcctcatatttgctcattatcttgaaaaacaatcttcaaaagttatc |
407 |
Q |
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| T |
36940322 |
attgctcttttggccgcctatttgctctttatcctgaaaaataaccttcaagagttatc |
36940264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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