View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6086_low_7 (Length: 413)

Name: NF6086_low_7
Description: NF6086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6086_low_7
NF6086_low_7
[»] chr6 (4 HSPs)
chr6 (35-409)||(3255647-3256021)
chr6 (59-152)||(7813983-7814076)
chr6 (67-191)||(7871216-7871340)
chr6 (57-128)||(7806822-7806893)
[»] chr4 (4 HSPs)
chr4 (61-191)||(14017655-14017785)
chr4 (199-401)||(14020277-14020483)
chr4 (236-408)||(14271406-14271579)
chr4 (272-406)||(14017848-14017982)
[»] chr1 (1 HSPs)
chr1 (43-163)||(37997616-37997736)
[»] chr7 (1 HSPs)
chr7 (50-141)||(19317704-19317795)


Alignment Details
Target: chr6 (Bit Score: 355; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 35 - 409
Target Start/End: Complemental strand, 3256021 - 3255647
Alignment:
Q  35 cacttaataatgatggaaacagtttggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctcttt 134  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3256021 cacttaataatgatggaaacagtttggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctcttt 3255922  T
Q  135 cactacaacagttctttcgaaacggtggagcaaactatgttgttcactacctgttctttgctttgaagatgaaaccaccaaagattatgacgccttcctt 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3255921 cactacaacagttctttcgaaacggtggagcaaactatgttgttcactacctgttctttgctttgaagatgaaaccaccaaagattatgacgccttcctt 3255822  T
Q  235 cgcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatcaacccttcaaaaagttttgcctcaagtgtcattttaaagaccgcaatc 334  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||||| ||||||||||| |||||    
T  3255821 cgcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatcaacccctcaaaatgtttcgcctcaagtgtcgttttaaagaccacaatc 3255722  T
Q  335 aaaagggtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagtattgaggaagttcatctcactc 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3255721 aaaagggtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagtattgaggaagttcatctcactc 3255647  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 59 - 152
Target Start/End: Original strand, 7813983 - 7814076
Alignment:
Q  59 tggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttc 152  Q
    |||| ||||||||||| |||||||||||||||||||||   |||||||| | |||||||||||| |||||| ||||| ||||||| || |||||    
T  7813983 tggtggatagaatcagcgatttaccggatgagttattgtctcacattctctcttttctcccaactaaactcgctttctctacaaccgtactttc 7814076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 191
Target Start/End: Original strand, 7871216 - 7871340
Alignment:
Q  67 agaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttcgaaacggtggagca 166  Q
    |||||||||  |||||| |||||||| |||    ||||||| | ||| |||||||| |||||| |||||||||||||  ||||||| |||||||||| |     
T  7871216 agaatcagtagtttacctgatgagttgttgtcttacattctctctttcctcccaaccaaactcgctttcactacaacccttctttccaaacggtggatcc 7871315  T
Q  167 aactatgttgttcactacctgttct 191  Q
     |||||| | |||||| ||||||||    
T  7871316 cactatgctattcactccctgttct 7871340  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 7806893 - 7806822
Alignment:
Q  57 tttggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaact 128  Q
    ||||||||||||||| ||||||||||| ||||||||| |||   ||||||| | |||||||| ||| |||||    
T  7806893 tttggtcgatagaataagtgatttaccagatgagttactgctttacattctctcttttctccaaaccaaact 7806822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 61 - 191
Target Start/End: Original strand, 14017655 - 14017785
Alignment:
Q  61 gtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaacagttctttcgaaacggt 160  Q
    ||||||||||| || |||||| | |||||||||||||  ||||| ||||||||||||||||||||  |  ||||||||||| | |||||||||||| |||    
T  14017655 gtcgatagaattagcgatttatcagatgagttattgcggcacatactttgttttctcccaacaaatattgctttcactacatccgttctttcgaaaaggt 14017754  T
Q  161 ggagcaaactatgttgttcactacctgttct 191  Q
    ||| ||||||||| | || ||| ||||||||    
T  14017755 ggaccaaactatgctatttactccctgttct 14017785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 199 - 401
Target Start/End: Original strand, 14020277 - 14020483
Alignment:
Q  199 gaagatgaaaccaccaaagattatgacgccttccttcgcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatcaac----ccttc 294  Q
    |||||||||| || ||| |||||||| | ||| |   |||||||| |||||||  |||||||| |||||||||||| |||||| || ||||    || ||    
T  14020277 gaagatgaaatcatcaacgattatgatgtcttaccatgcttctgttgcattgtcaatactatcatgctctctcctcatgcaaccaaccaactaaaccctc 14020376  T
Q  295 aaaaagttttgcctcaagtgtcattttaaagaccgcaatcaaaagggtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagtattgagg 394  Q
    |||| |||| ||||||| | || || || | ||| ||| |||||  ||||||||||||||||| |||||||||||||| ||||| ||||| |||| ||||    
T  14020377 aaaatgtttcgcctcaactttcgttatagataccacaagcaaaatcgtccatttaatgtgacaaaatggctagaagccacaaaagagcgttgtatcgagg 14020476  T
Q  395 aagttca 401  Q
    || ||||    
T  14020477 aacttca 14020483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 236 - 408
Target Start/End: Original strand, 14271406 - 14271579
Alignment:
Q  236 gcttctgtcgcattgttgatactatcctgctctctcctcgtgcaacaaatcaacccttcaaaaagttttgcctcaagtgtcattttaaagaccgcaatca 335  Q
    ||||||| | ||||||  ||| |||| ||||||||| ||||||||| ||  ||||| |||||| |||| ||||||| | || ||||  |  || ||| ||    
T  14271406 gcttctgccacattgtcaatattatcatgctctctcttcgtgcaaccaacaaacccctcaaaatgtttcgcctcaactttcgttttggatgccacaagca 14271505  T
Q  336 aaagg-gtccatttaatgtgacagaatggctagaagcctcaaaacagcgtagtattgaggaagttcatctcact 408  Q
    |||   |||||||||||||| || |||||||||||||| ||||| ||||| ||||||||||| |||| ||||||    
T  14271506 aaaatagtccatttaatgtgtcaaaatggctagaagccacaaaagagcgttgtattgaggaacttcacctcact 14271579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 406
Target Start/End: Original strand, 14017848 - 14017982
Alignment:
Q  272 ctcgtgcaacaaatcaacccttcaaaaagttttgcctcaagtgtcattttaaagaccgcaatcaaaagggtccatttaatgtgacagaatggctagaagc 371  Q
    |||||| ||| ||||||||| ||||||  ||| ||||||| ||||  ||||  || ||||| |||||  || |||||||| ||| | |||||||||||||    
T  14017848 ctcgtgtaaccaatcaacccctcaaaatctttagcctcaactgtcgctttatggaacgcaagcaaaatagttcatttaatttgaaaaaatggctagaagc 14017947  T
Q  372 ctcaaaacagcgtagtattgaggaagttcatctca 406  Q
    | ||||||  | | ||||||||||| |||||||||    
T  14017948 cacaaaacgacattgtattgaggaatttcatctca 14017982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 163
Target Start/End: Complemental strand, 37997736 - 37997616
Alignment:
Q  43 aatgatggaaacagtttggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactacaa 142  Q
    |||| ||| |||| ||||| |||||||||||| |||||||| ||||||||||||    |||| || | |||||| ||||  |||||| |||| |||||||    
T  37997736 aatggtggcaacaatttggacgatagaatcagcgatttaccagatgagttattgtgttacatactctcttttctaccaatgaaactcgcttttactacaa 37997637  T
Q  143 cagttctttcgaaacggtgga 163  Q
    | |||||||| || |||||||    
T  37997636 ctgttctttcaaagcggtgga 37997616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 141
Target Start/End: Complemental strand, 19317795 - 19317704
Alignment:
Q  50 gaaacagtttggtcgatagaatcagtgatttaccggatgagttattgcaacacattctttgttttctcccaacaaaactctctttcactaca 141  Q
    |||||||||  || |||||||| || |||||||| ||||||||||||    ||||||| | ||||||||||||||||||  |||| ||||||    
T  19317795 gaaacagttcagtggatagaataagcgatttaccagatgagttattgatttacattctctcttttctcccaacaaaactagcttttactaca 19317704  T

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