View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6086_low_9 (Length: 378)
Name: NF6086_low_9
Description: NF6086
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6086_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 3 - 361
Target Start/End: Complemental strand, 42603942 - 42603587
Alignment:
| Q |
3 |
atcatattatataatcttgtgctcctgctgtcatcttatttgtgtaggaaattatcctagtgtaatcttatttgtgtagaaaattaaattactataaacc |
102 |
Q |
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| T |
42603942 |
atcatattatataatcttgtgctcctgctgtcatcttatttgtgtaggaaattatcc--gtgtaatcttatttgtgtagaaaattaaattactataaacc |
42603845 |
T |
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| Q |
103 |
cataagtgaaaattacagtctttcatatcaaccagcatcttctgttatcttgaagattaagaaaaggatccaaccatgatttgtcagacagaaaataaca |
202 |
Q |
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| T |
42603844 |
cataagtgaaaattacggtctttcatatcaaccagcatcttctgttatcttgaagattaagaaaaggatccaaccatgatttgtcagacagaaaataaca |
42603745 |
T |
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| Q |
203 |
agtttgaattcgacatgaaactgagtttttgtgcaagtgcaatgctaaaaggaacaatcttttttgtacaacacataaatgatcaatggtatagtgacaa |
302 |
Q |
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| T |
42603744 |
agtttgaattcgacatgaaactgagtttttgtgcaagtgcaatgctaaaaggaacaat-ttttttttacaacacataaatgatcaatggtatagtgacaa |
42603646 |
T |
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| Q |
303 |
aattttacttctcatttgacacatccaagtgcatggttacctacgacctgattgatttg |
361 |
Q |
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| T |
42603645 |
aattttacttctcatttgacacatccaagtgcatggttacctacgacctgattgatttg |
42603587 |
T |
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