View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6087_low_2 (Length: 263)

Name: NF6087_low_2
Description: NF6087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6087_low_2
NF6087_low_2
[»] chr8 (5 HSPs)
chr8 (17-247)||(11770777-11771022)
chr8 (17-126)||(11784417-11784526)
chr8 (17-114)||(11779000-11779097)
chr8 (17-114)||(11764589-11764686)
chr8 (197-238)||(8629524-8629565)
[»] chr6 (1 HSPs)
chr6 (196-243)||(26559199-26559246)
[»] chr2 (1 HSPs)
chr2 (208-238)||(7033273-7033303)
[»] chr7 (2 HSPs)
chr7 (195-236)||(6601437-6601478)
chr7 (215-243)||(30535626-30535654)
[»] chr5 (1 HSPs)
chr5 (203-247)||(18286850-18286894)


Alignment Details
Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 247
Target Start/End: Original strand, 11770777 - 11771022
Alignment:
Q  17 atgattattttgcagaaaattccagcttatacactcatgaaaaatatgtatcaatggtggttggtaatattacaacttggatcaaagtatgtaaaagtca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11770777 atgattattttgcagaaaattccagcttatacactcatgaaaaatatgtatcaatggtggttggtaatattacaacttggatcaaagtatgtaaaagtca 11770876  T
Q  117 ctttacttctata---------------agttcatttcgttataataaagacatgtttggatttacttctttaagtttatcgaccagtataaatatttgt 201  Q
    |||||||||||||               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11770877 ctttacttctatatttttttaatattaaagttcatttcgttataataaagacatgtttggatttacttctttaagtttatcgaccagtataaatatttgt 11770976  T
Q  202 tagaccgtttaaaagaacttatgaaaacaacttatgatatgtctat 247  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  11770977 tagactgtttaaaagaacttatgaaaacaacttatgatatgtctat 11771022  T

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Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 126
Target Start/End: Original strand, 11784417 - 11784526
Alignment:
Q  17 atgattattttgcagaaaattccagcttatacactcatgaaaaatatgtatcaatggtggttggtaatattacaacttggatcaaagtatgtaaaagtca 116  Q
    |||||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||| |||||||   ||||||||||||||| ||| |    
T  11784417 atgattattttgtagaaaattccagcttatacactcatgaaaaatacgtatccatggtagttggtaatcttacaacagtgatcaaagtatgtaagagtta 11784516  T
Q  117 ctttacttct 126  Q
    ||||||||||    
T  11784517 ctttacttct 11784526  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 11779000 - 11779097
Alignment:
Q  17 atgattattttgcagaaaattccagcttatacactcatgaaaaatatgtatcaatggtggttggtaatattacaacttggatcaaagtatgtaaaagt 114  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | |||  |  |||||||||||||||||||    
T  11779000 atgattattttgcagaaaattccagcttatacactcatgaaaaatatgtatccatggtagttggtaatctcacagatgtgatcaaagtatgtaaaagt 11779097  T

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Target: chr8; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 11764589 - 11764686
Alignment:
Q  17 atgattattttgcagaaaattccagcttatacactcatgaaaaatatgtatcaatggtggttggtaatattacaacttggatcaaagtatgtaaaagt 114  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| | |||  |  |||||||||||||||||||    
T  11764589 atgattatttttcagaaaattccagcttatacactcatgaaaaatatgtatccatggtagttggtaatctcacagatgtgatcaaagtatgtaaaagt 11764686  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 8629565 - 8629524
Alignment:
Q  197 tttgttagaccgtttaaaagaacttatgaaaacaacttatga 238  Q
    ||||| ||||||||| | ||||||||||||||||||||||||    
T  8629565 tttgtgagaccgtttgagagaacttatgaaaacaacttatga 8629524  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 26559199 - 26559246
Alignment:
Q  196 atttgttagaccgtttaaaagaacttatgaaaacaacttatgatatgt 243  Q
    |||||| |||| ||||  ||||||||||||||||||||||||||||||    
T  26559199 atttgtgagactgtttggaagaacttatgaaaacaacttatgatatgt 26559246  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 238
Target Start/End: Original strand, 7033273 - 7033303
Alignment:
Q  208 gtttaaaagaacttatgaaaacaacttatga 238  Q
    |||||||||||||||||||||||||||||||    
T  7033273 gtttaaaagaacttatgaaaacaacttatga 7033303  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 6601478 - 6601437
Alignment:
Q  195 tatttgttagaccgtttaaaagaacttatgaaaacaacttat 236  Q
    ||||||| ||||||||| ||||||||||||||||||| ||||    
T  6601478 tatttgtgagaccgtttgaaagaacttatgaaaacaaattat 6601437  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 243
Target Start/End: Complemental strand, 30535654 - 30535626
Alignment:
Q  215 agaacttatgaaaacaacttatgatatgt 243  Q
    |||||||||||||||||||||||||||||    
T  30535654 agaacttatgaaaacaacttatgatatgt 30535626  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 18286894 - 18286850
Alignment:
Q  203 agaccgtttaaaagaacttatgaaaacaacttatgatatgtctat 247  Q
    ||||||||||||||| |||||  |||||||||||||||| |||||    
T  18286894 agaccgtttaaaagagcttattgaaacaacttatgatatatctat 18286850  T

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