View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6087_low_4 (Length: 248)
Name: NF6087_low_4
Description: NF6087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6087_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 41315343 - 41315575
Alignment:
| Q |
1 |
taattagtaacattgaacgtttaaaaaatgagttgagccgaatatttaaagttgtttgatttaccgaagnnnnnnnn--ttgtttgagcttgagttgttt |
98 |
Q |
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| T |
41315343 |
taattagtaacattgaacgtttaaaaaatgagttgagccgaatatttaaagttgtttgatttaccgaagaaaaaaaaaattgtttgagcttgagttgttt |
41315442 |
T |
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| Q |
99 |
aaagtaaattagtaaagtctaggtgtgtttgaaaaatccaaatttgctgggaaaatacatgtaatatgaagaaagaaaaagcactagagattttatattt |
198 |
Q |
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| T |
41315443 |
aaagttaattagtaaagtccaggtgtgtttgaaaaatccaaatttgttgggaaaatacatgtaatatgaagaaagaaaaagcactagagattttatattt |
41315542 |
T |
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| Q |
199 |
agagtccattagtgattttcaagaacaccaaat |
231 |
Q |
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| T |
41315543 |
agagtccattagtgattttcaagaacaccaaat |
41315575 |
T |
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