View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6087_low_5 (Length: 248)
Name: NF6087_low_5
Description: NF6087
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6087_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 41315341 - 41315101
Alignment:
| Q |
1 |
ttattagactttatcttacatcgagtttcaactcaagttctcaaattctcttatctcttaactcaagtcacttgagttatccaaccccctcaactcggct |
100 |
Q |
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| T |
41315341 |
ttattagactttatcttacatcgagtttcaacttgagttctcaaattctcttatctcttaactcaagtcacttgagttatccaaccccctcaactcggct |
41315242 |
T |
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| Q |
101 |
cgtttcacctaattatcactaatctcgcaataattacc-caaccattaattaaaatagctagttggtgtaataattgaagtatgtagagtacttacaagc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41315241 |
cgtttcacctaattatcactaatctcgcaataattaccacaaccattaattaaaatagctagttggtgtaataattgaagtatgtagagtacttacaagc |
41315142 |
T |
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| Q |
200 |
aagttcattccatggtggatgattccagattgttgatgatg |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
41315141 |
aagttcattccatggtggatgattccagattgttgatgatg |
41315101 |
T |
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