View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6088_high_1 (Length: 805)

Name: NF6088_high_1
Description: NF6088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6088_high_1
NF6088_high_1
[»] chr8 (1 HSPs)
chr8 (13-792)||(38117240-38118007)


Alignment Details
Target: chr8 (Bit Score: 690; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 13 - 792
Target Start/End: Complemental strand, 38118007 - 38117240
Alignment:
Q  13 aatatgactaagaaataaattaatagatagacactaaaaatgtatgnnnnnnnataaagaagccagactggttgaaccgcagttcaacctggttctatcg 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||    
T  38118007 aatatgactaagaaataaattaatagatagacattaaaaatgtatgtttttttataaagaagccagactggttgaaccgcagttcaacctggttctatcg 38117908  T
Q  113 gttctatagggctgcgagtgtgaactgtctgcggctgaaccatgtgttacaccggctggtttccagtgaaaccagtcggtccgatttttacaacattgtc 212  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38117907 gttctatagggctgcgagtgtgaactgtatgcggctgaaccatgtgttacaccggctggtttccagtgaaaccagtcggtccgatttttacaacattgtc 38117808  T
Q  213 gcgtatacatcaaaaaccatggtatcgcaactgagattattgtcgcagaccttgtttaaaaactcgaatgatacttagaataattaagtgaataaatgat 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||    
T  38117807 gcgtatacatcaaaaaccatggtatcgcaactgagattattgtcgcagaccttgtttaaaaactcgaatgatacttagaataa------------atgat 38117720  T
Q  313 tacctctatttggaaactgagtgctgataaagcagtcaagcttgcaactctaattctgtatgtctttcctgagacgactgtttgtgaaaagggagagcat 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38117719 tacctctatttggaaactgagtgctgataaagcagtcaagcttgcaactctaattctgtatgtctttcctgagacgactgtttgtgaaaagggagagcat 38117620  T
Q  413 tcaggatttgatgagttacaaacaacagcagcaggtaagcttggtaataacgaacagttgtatcttccttttccatgaatcagaagtgactgagggaaac 512  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38117619 tcaggatttgatgagttacaaacaccagcagcaggtaagcttggtaataacgaacagttgtatcttccttttccatgaatcagaagtgactgagggaaac 38117520  T
Q  513 caaatatacaaagaaacaataaaaccagcaattagacaattgaagaaagaaaattaagatataagattttgaatttgtatttttctgattagtatatcca 612  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38117519 caaatatacaaagaaacaataaaaccagcaattagagaattgaagaaagaaaattaagatataagattttgaatttgtatttttctgattagtatatcca 38117420  T
Q  613 tctaattcttacatctggttcccccacccattgaaaagggattgcagacaatccagcagattgttcataagtactctcatggtaccaatcattcaaaata 712  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||||||    
T  38117419 tctaattcttacatctggttcccccacccattgaaaagggattgcagacaatctagcagattgttcataagtactcctatggtaccaatcattcaaaata 38117320  T
Q  713 atgcttctatcaaagtcataagaaaaaggttcagggtcattaggtgccacacgaatcattccatatactcctgcttccct 792  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38117319 atgcttctatcaaagtcataagaaaaaggttcagggtcattaggtgccacacgaatcattccatatactcctgcttccct 38117240  T

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