View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6088_high_19 (Length: 202)
Name: NF6088_high_19
Description: NF6088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6088_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 114; Significance: 5e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 50835208 - 50835083
Alignment:
| Q |
16 |
cagacacttattttgtctatagtgaaaaagctttttaaaacatggattgttgcatgcatgaagatttctatacattaatatttctcatttaaatatctta |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
50835208 |
cagacacttattttgtctatagtgaaaaagctttttaaaacatggattgtggcatgcatgaagatttctatacatcaatatttctcatttaaatatctta |
50835109 |
T |
|
| Q |
116 |
aaaaattcacctacatgtaacgaaag |
141 |
Q |
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|||||||||||||||||||| ||||| |
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| T |
50835108 |
aaaaattcacctacatgtaatgaaag |
50835083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 50840645 - 50840770
Alignment:
| Q |
16 |
cagacacttattttgtctatagtgaaaaagctttttaaaacatggattgttgcatgcatgaagatttctatacattaatatttctcatttaaatatctta |
115 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
50840645 |
cagacacttattttgtctatagtgaaaaagctttttaaaacatggattgtggcatgcatgaagatttctatacatcaatatttctcatttaaatatctta |
50840744 |
T |
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| Q |
116 |
aaaaattcacctacatgtaacgaaag |
141 |
Q |
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|||||||||||||||||||| ||||| |
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| T |
50840745 |
aaaaattcacctacatgtaatgaaag |
50840770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 11730078 - 11729953
Alignment:
| Q |
16 |
cagacacttattttgtctatagtgaaaaagctttttaaaacatggattgttgcatgcatgaagatttctatacattaatatttctcatttaaatatctta |
115 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11730078 |
cagacacttattttgtctatagtgaaaaagctttttaaaacattgattgttgcatgcatgaagatttctatacatcaatatttctcatttaaatatctta |
11729979 |
T |
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| Q |
116 |
aaaaattcacctacatgtaacgaaag |
141 |
Q |
| |
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||||||||| |||||||||| ||||| |
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|
| T |
11729978 |
aaaaattcaactacatgtaatgaaag |
11729953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 16 - 141
Target Start/End: Complemental strand, 23740390 - 23740265
Alignment:
| Q |
16 |
cagacacttattttgtctatagtgaaaaagctttttaaaacatggattgttgcatgcatgaagatttctatacattaatatttctcatttaaatatctta |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
23740390 |
cagacacttattttgtctatagtgaaaaagctttttaaaacattgattgttgcatgcatgaagatttctatacatcaatatttctcatttaaatatctta |
23740291 |
T |
|
| Q |
116 |
aaaaattcacctacatgtaacgaaag |
141 |
Q |
| |
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||||||||| || ||||||| ||||| |
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| T |
23740290 |
aaaaattcaacttcatgtaatgaaag |
23740265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 33346183 - 33346138
Alignment:
| Q |
142 |
atgctggttcaagtttagtaaaataattacccgctaaagacaaatt |
187 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33346183 |
atgctggttcaagtttagtaaaataattacccgctaaagacaaatt |
33346138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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