View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6088_high_2 (Length: 546)
Name: NF6088_high_2
Description: NF6088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6088_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 82 - 527
Target Start/End: Original strand, 13721575 - 13722020
Alignment:
| Q |
82 |
tatttgcgtaatctattttttataagccgaagaataaaggttaaaaacatactttttatacgttgctgaattgaatccattgttgagaaagtgcatactt |
181 |
Q |
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| T |
13721575 |
tatttgcgtaatctatttttcataggccgaagaataaaggttaaaaacatactttttatacgttg-----ttgaagccattgttgagaaagtgcatactt |
13721669 |
T |
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| Q |
182 |
cactcagtcctctcagtattgtacaatttatgcagtgaagtagttcaaaaatgataatcattgaatcgttgtgaagctagtaatttcacacggcttattt |
281 |
Q |
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| T |
13721670 |
cactcagtcctctcagtattgtacaatttatgcagtgaagtagttcaaaaatgataatcattgaatcgttgtgaagctagtaatttcacagggcttattt |
13721769 |
T |
|
| Q |
282 |
attttaatctatagaagacaaaagtgaattataagtattaccatagaaattgcaaatagatatgaccccagttccatttaccaatcatgacatgccatac |
381 |
Q |
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| T |
13721770 |
attttaatctatagaagacaaaagtgaattataagtattaccatagaaattgcaaatagatatgaccccagttccatttaccaatcatgacatgccatac |
13721869 |
T |
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| Q |
382 |
acaaaagtccaaacctggccgtttccttcagactcttctttttcaattcatgataa-----aaacatttatattataataatataaagtttcaaaccaaa |
476 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |
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| T |
13721870 |
acaaaagtccaaacctggccgtttccttcagactcttctttttcaattcatgataatggagtaacatttatattataataatttaaagtttcaaaccaaa |
13721969 |
T |
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| Q |
477 |
cacttat-aaaaaattcacaaatgaaagccttgaaatttgatgataacatac |
527 |
Q |
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| T |
13721970 |
cacttataaaaaaattcacaaatgaaagccttgaaa-ttgatgataacatac |
13722020 |
T |
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