View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6088_high_9 (Length: 378)
Name: NF6088_high_9
Description: NF6088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6088_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 53490836 - 53491123
Alignment:
| Q |
11 |
cataggtgtgtactctcttcatgtggttatttataagatcatttttcaattaataatagtcatttacttttttgttacaatcacaaaggtaaaataaata |
110 |
Q |
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| T |
53490836 |
cataggtgtgtactctgttcatgtggttatttataagatcatttttcaattaataatagtcatttacttttttgttacgatcataaaggtaaaaaaatta |
53490935 |
T |
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| Q |
111 |
aaa-caccttagaaatatcaaacctcagtctccaagtgccaaaatttagtcnnnnnnntcacgcaagcacaagttgaaaagaaaaatattagaatatgtt |
209 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
53490936 |
aaaacaccttagaaatatcaaacctcagtctccaagtgccaaaatttagtcaaaaaaatctcgcaagcacaagttgaaaagaaaaatattagaatatgtt |
53491035 |
T |
|
| Q |
210 |
ccttgaaaccaaaatatttaacgaacaaataaacatacacatgcatatgtgaatggtccatatattgaaaaggatagagcgattctaa |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491036 |
ccttgaaaccaaaatatttaacgaacaaataaacatacacatgcatttgtgaatggtccatatattgaaaaggatagagcgattctaa |
53491123 |
T |
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