View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6088_low_12 (Length: 293)
Name: NF6088_low_12
Description: NF6088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6088_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-150; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-150
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 3110968 - 3110693
Alignment:
| Q |
1 |
aggaagttgttgcgcaaatcggtccgaagagaattaggtttgaatgataatgatatgcttgtgatatctctaagtagcatcaatcctggaaagggacagt |
100 |
Q |
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| T |
3110968 |
aggaagttgttgcgcaaatcagtccgaagagaattaggtttgaatgataatgatatgcttgtgatatctctaagtagcatcaatcctggaaagggacagt |
3110869 |
T |
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| Q |
101 |
tattgtttcttgaatcagcaaagtcagtattagaaaatgaatcatttgaagatgattacaaaatgcaaaattcatcaaaagttgaagatatttatacttt |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3110868 |
tattgtttcttgaaccagcaaagtcagtattagaaaatgaatcatttgaagatgattacaaaatgcaaaattcatcaaaagttgaagatatttatacttt |
3110769 |
T |
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| Q |
201 |
ggctagaagacatcatcttagaaaattgttaccaatgatgaaggatagcaatagcaagagagtgttgtccaacaat |
276 |
Q |
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| T |
3110768 |
ggctagaagacatcatcttagaaaattgttaccaatgatgaaggatagcaatagcaagagagtgttgtccaacaat |
3110693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 26270384 - 26270640
Alignment:
| Q |
1 |
aggaagttgttgcgcaaatcggtccgaagagaattaggtttgaatgataatgatatgcttgtgatatctctaagtagcatcaatcctggaaagggacagt |
100 |
Q |
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|||||||| ||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
26270384 |
aggaagttattgcgtgcatcagtccgtagagaattaggtttgaatgataatgatatgcttgtgatatctctaagtagcatcaatcctggaaagggtcagt |
26270483 |
T |
|
| Q |
101 |
tattgtttcttgaatcagcaaagtcagtattagaaaatgaatcatttgaagatgattacaaaatgcaaaattcatcaaaagttgaagatatttatacttt |
200 |
Q |
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| T |
26270484 |
tattgtttcttgaatcagcaaagtcagtattagaaaatgaatcatttcaagatgataacaaaatgcaaaattcatcaaaagttgaagatatttatacttt |
26270583 |
T |
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| Q |
201 |
ggctagaagacatcatcttagaaaattgttaccaatgatgaaggatagcaatagcaa |
257 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
26270584 |
ggctagaagacatcatcttagaaagttgttgccaatgatgaaggatagcaatagcaa |
26270640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 5 - 135
Target Start/End: Original strand, 44062963 - 44063093
Alignment:
| Q |
5 |
agttgttgcgcaaatcggtccgaagagaattaggtttgaatgataatgatatgcttgtgatatctctaagtagcatcaatcctggaaagggacagttatt |
104 |
Q |
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|||||||||| |||||||||||| |||| | || || | ||| |||||||||||||| |||||||||||||||||||| || |||||||| ||| |||| |
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| T |
44062963 |
agttgttgcgagaatcggtccgaaaagaaatgggattaactgacaatgatatgcttgtaatatctctaagtagcatcaaccccggaaagggccagctatt |
44063062 |
T |
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| Q |
105 |
gtttcttgaatcagcaaagtcagtattagaa |
135 |
Q |
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| T |
44063063 |
gcttcttgaatcagcaagctcagtagtagaa |
44063093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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