View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6088_low_14 (Length: 251)
Name: NF6088_low_14
Description: NF6088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6088_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 18466552 - 18466796
Alignment:
| Q |
3 |
tgtttctagaagaatccttgtgtttcaatgcttgatcgttgattgcaattattgtcctaattaaaaatctagcatcattcgcagtaggattcggaatgaa |
102 |
Q |
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| T |
18466552 |
tgtttctagaagaatccttgtgtttcaatgcttgatcgttgcttgcaattattgtcctaattaaaagtctagcatcattctcagtaggattcggaatgaa |
18466651 |
T |
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| Q |
103 |
agattt-acatgcatcatagagtcatc--ctttctaataaactcacagctaagttcctcatgttaatgatggataggtggaggggataagttacagaaaa |
199 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18466652 |
agattttacatgcatcatagagtcatctcctttctaataaactcacagctaagttcctcatgttaaggatggataggtggaggggataagttacagaaaa |
18466751 |
T |
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| Q |
200 |
taaggtttgagaggaagaaaggagatataaaaattgcctatgatt |
244 |
Q |
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| T |
18466752 |
taaggtttgagaggaagaaaggagatataaaaattgcctatgatt |
18466796 |
T |
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