View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6088_low_18 (Length: 215)
Name: NF6088_low_18
Description: NF6088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6088_low_18 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 4360804 - 4360602
Alignment:
| Q |
14 |
catcaaatggtttgaagtcagcaagttttttgtaattttactttggtgcggcatgcatatatagaaaccatctataaattaagttccactacacataaat |
113 |
Q |
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| T |
4360804 |
catcaaatggtttgaagtcagtaagttttttgtaattttactttggtgcggcatgcatatatagaaaccatctataaattaagttccactaaacataaat |
4360705 |
T |
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| Q |
114 |
aattaaagaaattaaacaaactttattgacaaagagggatgaatgaggaaaactacaaaatgag-actgatctatcattagttaaataattgagcacgtt |
212 |
Q |
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| T |
4360704 |
aattaaagaaattaaacaaacgttgttgacaaagagggatgaatgaggaaaactacaaaatgagaactgatctatcatcagttaaataattgagcacgtt |
4360605 |
T |
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| Q |
213 |
tgc |
215 |
Q |
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| T |
4360604 |
tgc |
4360602 |
T |
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