View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6088_low_5 (Length: 471)
Name: NF6088_low_5
Description: NF6088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6088_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 40557048 - 40556590
Alignment:
| Q |
1 |
attgtcagttccttctggatcaccaacttcacctcacaacctcccatttgttccatcttttctttaaacaccaatggaagctccggtttctcttcttgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40557048 |
attgtcagttccttctggatcaccaacttcacctcacaaccttccatttgttcaatcttttctttaaacgccaatggaagctccggtttctcttcttgca |
40556949 |
T |
|
| Q |
101 |
cctggttcttgcgtttctttgacggtttgcttgatcgttcattcttgtcttttcttttcttgatctcctttttggaaccttcattggatgaagatccctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40556948 |
cctggttcttgcgtttctttgacggtttgcttgatcgttcattcttgtcttttcttttcttgatctcctttttggaaccttcattggatgaagatccctc |
40556849 |
T |
|
| Q |
201 |
atgagctccctcattattctttgtatcaggattgccaaaagcaattctcacccgtggtccatcacttcttcttgtcttgataagttttttcccaacaccc |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40556848 |
atgagctccctcattattctttgtatcaggattgccaaaagcaattctcacccgtggtccatcacttcttcttgtcttgataagttttttcccaacaccc |
40556749 |
T |
|
| Q |
301 |
tcatcgcgtctacaatcagcaaccccgcgattctttgattcaagcataccatatttaagactgctaaaatctcttgtcgctgattggttccttcnnnnnn |
400 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40556748 |
tcatcgcgtctacaatcagtaaccccgcgattctttgattcaagcataccatatttaagaatgctaaaatctcttgtcgctgattggttccttctttttt |
40556649 |
T |
|
| Q |
401 |
ncttggttattattttgtcaaaaccttcattgcatccacaaacaacgtcctcatgattc |
459 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
40556648 |
tcttggttattattttgtcaaaaccttcattgcatccacaaacaacatcctcatgattc |
40556590 |
T |
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