View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6088_low_6 (Length: 459)
Name: NF6088_low_6
Description: NF6088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6088_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 48168986 - 48169404
Alignment:
| Q |
18 |
tgaaggtcttcaatatcgtacactatcaagttgctataggactctgcgattctctgcaatcgaaaaggctttaattaagttgtgacagaagtctgcgaga |
117 |
Q |
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| T |
48168986 |
tgaaggtcttcaatatcgtacactatcaagttgctataggactctgtgattctctgcaatcgaaaaggctttaattaaggtgtgacagaagtctgcgaga |
48169085 |
T |
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| Q |
118 |
aaaaatgcaacttaaataatcaaggtgaaaaacaaccatgccaataatagagtatttgtaaaacccataaaacaaagaaatggtaaagcatactgaaatc |
217 |
Q |
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| T |
48169086 |
aaaaatgcaacttaaataatcaaggtgaaaaacaaccatgccaataatagagtatttgtaaaacccataaaacaaagaaatggtaaagcatactgaaatc |
48169185 |
T |
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| Q |
218 |
atttttcataaacaagcaaaatatataaaacaaaaaccagccaaagcacaagaagtgcaaccattgaaaacacattaacttccctgtttgagggtgaggg |
317 |
Q |
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| T |
48169186 |
atttttcataaacaagtaaaatatataaaacaaaaaccagccaaagcacaagaagtgcaaccattgaaaacacattaacttccctgtt------------ |
48169273 |
T |
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| Q |
318 |
tgagggtgagggtgagcaggaaaatatcaaatgtaaactacacattgtgctttggttaaaagagacatgatcaggacatcaatatctccacatgttaaaa |
417 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
48169274 |
tgatggtgagggtgagcaggaaaatatcaaatgtaaactacacattgtgctttggttaaaagagatatgatcaggacatcaatatctccacatgttaaaa |
48169373 |
T |
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| Q |
418 |
taaataaatttttatcgttaactgtattcat |
448 |
Q |
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| T |
48169374 |
taaataaatttttatcgttaactgtattcat |
48169404 |
T |
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