View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6088_low_7 (Length: 433)
Name: NF6088_low_7
Description: NF6088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6088_low_7 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] scaffold0184 (3 HSPs) |
| | |
|
| [»] scaffold0078 (6 HSPs) |
| | |
|
| [»] scaffold0891 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 433
Target Start/End: Complemental strand, 5906303 - 5905871
Alignment:
| Q |
1 |
acaactgcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgcatcgcgctctcaaggattgaattccaaccacaatgactca |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5906303 |
acaaatgcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgcatcgcgctctcaaggattgaactccaaccacaatgactca |
5906204 |
T |
|
| Q |
101 |
agaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataaccattccttgctccttggttctctccaagaacccagatgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5906203 |
agaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataaccattccttgctccttggttctctccaagaacccagatgg |
5906104 |
T |
|
| Q |
201 |
taaaaactgcgaaagatcaacatcgttttgtgctgaaagatatgcaccacttgctgaactacttggtgctcttacaacccataagaatttatgattactc |
300 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5906103 |
taaaacctgcgaaagatcaacatcgttttgtgctgaaagatatgcaccacatgctgaactacttggtgctcttacaacccataagaatttatgattactc |
5906004 |
T |
|
| Q |
301 |
aattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaacaaggctgctgtttatcta |
400 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
5906003 |
aattccaaaccaatagctagctcatcagtttgttcttgtgaaagtgcaccaccgcttccaaaagaaacatacaaaactgaacaaggctgctgtttatcta |
5905904 |
T |
|
| Q |
401 |
accatgtcaaacactccataccattgctacttt |
433 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
5905903 |
accatgtcaaacactccataccattgctacttt |
5905871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 5902819 - 5902395
Alignment:
| Q |
1 |
acaactgcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgcatcgcgctctcaaggattgaattccaaccacaatgactca |
100 |
Q |
| |
|
||||||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||||| ||||||| |
|
|
| T |
5902819 |
acaactgcattcattctttgctcaccaaacaaaggccatgtgattagtggcacaccatgcatcacactctcaaggattgaattccagccacagtgactca |
5902720 |
T |
|
| Q |
101 |
agaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataaccattccttgctccttggttctctccaagaacccagatgg |
200 |
Q |
| |
|
||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5902719 |
agaatccaccaactgatctgtgactaagtgtttcaatctgaggtgcccatgatggaataaccatcccttgctccttggttctctccaagaacccaggtgg |
5902620 |
T |
|
| Q |
201 |
taaaaactgcgaaagatcaacatcgttttgtgctgaaagatatgcaccacttgctgaactacttggtgctcttacaacccataagaatttatgattactc |
300 |
Q |
| |
|
|||||||||| ||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5902619 |
taaaaactgcaaaagatcaacatcattttctgctgaaagatatgcaccactggctgaactacttggtgctcttacaacccataagaatttatgattactc |
5902520 |
T |
|
| Q |
301 |
aattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaacaaggctgctgtttatcta |
400 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||| || |
|
|
| T |
5902519 |
aattccaaaccaatagccaactcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacatacaaaactgaacaaggttgttgtttatgta |
5902420 |
T |
|
| Q |
401 |
accatgtcaaacactccataccatt |
425 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
5902419 |
accatgtcagacactccataccatt |
5902395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 3 - 416
Target Start/End: Complemental strand, 1963641 - 1963231
Alignment:
| Q |
3 |
aactgcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgcatcgcgctctcaaggattgaattccaaccacaatgactcaag |
102 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||| ||||||||||||||||||| || | | ||||||||| |||||||||||||||||||| ||| |
|
|
| T |
1963641 |
aactgcatttgttctctgctcagcatacagaggccaagtgattagtggcacaccatacaccacactctcaagggttgaattccaaccacaatgagacaaa |
1963542 |
T |
|
| Q |
103 |
aatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataaccattccttgctccttggttctctccaagaacccagatggta |
202 |
Q |
| |
|
|| ||||||| || ||||||||||||||| |||||| |||||||||||||||| |||||| ||||| ||||||||||||||||| ||||||||||||| |
|
|
| T |
1963541 |
aacccaccaatggaactgtgactaaggatttgaatctgtggtgcccatgatggaacaaccatcccttgttccttggttctctccaaaaacccagatggta |
1963442 |
T |
|
| Q |
203 |
aaaactgcgaaagatcaacatcgttttgtgctgaaagatatgcaccacttgctgaactacttggtgctcttacaacccataagaatttatgattactcaa |
302 |
Q |
| |
|
||||||| || |||||||||| |||||||||||||||| || |||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1963441 |
aaaactgtaaaggatcaacatc---agatgctgaaagatatgcagcatttgctgtactacttggagctcttacaacccataagaatttatgattactcaa |
1963345 |
T |
|
| Q |
303 |
ttccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaacaaggctgctgtttatctaac |
402 |
Q |
| |
|
||||||||| | ||| | |||||||||||||||||| ||||||| |||||||| ||||||||||||| ||||||||||||||| ||||| || ||| |
|
|
| T |
1963344 |
ttccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactaccaaaagaaacatacaaaactgaacaaggacattgtttgtccaac |
1963245 |
T |
|
| Q |
403 |
catgtcaaacactc |
416 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
1963244 |
catgtcagacactc |
1963231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 7 - 415
Target Start/End: Original strand, 2018175 - 2018580
Alignment:
| Q |
7 |
gcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgcatcgcgctctcaaggattgaattccaaccacaatgactcaagaatc |
106 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | | |||||||| |||||||||||||||| ||| ||||||| | |
|
|
| T |
2018175 |
gcattcgttctctgctcagcaaatagaggccatgtgattagtggcacaccatgcaacacactctcaagcgttgaattccaaccacagtgagtcaagaacc |
2018274 |
T |
|
| Q |
107 |
caccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataaccattccttgctccttggttctctccaagaacccagatggtaaaaa |
206 |
Q |
| |
|
|||||||||| |||||| |||||||| |||||| ||||||||||||||||||||||| ||||| ||||| |||||||||||||||| || |||||||| |
|
|
| T |
2018275 |
caccaactgaactgtgacgaaggatttgaatctgtggtgcccatgatggaataaccatcccttgttccttttttctctccaagaaccctgaaggtaaaaa |
2018374 |
T |
|
| Q |
207 |
ctgcgaaagatcaacatcgttttgtgctgaaagatatgcaccacttgctgaactacttggtgctcttacaacccataagaatttatgattactcaattcc |
306 |
Q |
| |
|
|| || | |||||||| |||||||||||||||| || | |||| | ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2018375 |
ttgtaaagggtcaacatc---agatgctgaaagatatgcagcattggctgtattacttggtgatcttacaacccataagaatttatgattactcaattcc |
2018471 |
T |
|
| Q |
307 |
aaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaacaaggctgctgtttatctaaccatg |
406 |
Q |
| |
|
||||| | ||| ||||||| |||||||||||| ||||||| |||||||| ||||||||||||| |||||||||||||| |||||||| || ||||||| |
|
|
| T |
2018472 |
aaacccaaagccagctcattaatttgttcttgcgaaagtgtgccaccactcccaaaagaaacatacaaaactgaacaagtttgctgtttgtccaaccatg |
2018571 |
T |
|
| Q |
407 |
tcaaacact |
415 |
Q |
| |
|
|| ||||| |
|
|
| T |
2018572 |
ccagacact |
2018580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 7 - 406
Target Start/End: Original strand, 2014792 - 2015188
Alignment:
| Q |
7 |
gcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgcatcgcgctctcaaggattgaattccaaccacaatgactcaagaatc |
106 |
Q |
| |
|
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||| | | |||||||| ||||||||||||||||| ||| ||||||| | |
|
|
| T |
2014792 |
gcattcgttctctgctcagcaaatagaggccatgtgattagtggcacaccatgcaacacactctcaagcattgaattccaaccacagtgagtcaagaacc |
2014891 |
T |
|
| Q |
107 |
caccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataaccattccttgctccttggttctctccaagaacccagatggtaaaaa |
206 |
Q |
| |
|
|||||||||| |||||| |||||||| |||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| || |||||||| |
|
|
| T |
2014892 |
caccaactgaactgtgacgaaggatttgaatctgtggtgcccatgatggaataaccatcccttgttcctttgttctctccaagaaccctgaaggtaaaaa |
2014991 |
T |
|
| Q |
207 |
ctgcgaaagatcaacatcgttttgtgctgaaagatatgcaccacttgctgaactacttggtgctcttacaacccataagaatttatgattactcaattcc |
306 |
Q |
| |
|
|| || | |||||||| |||||||||||||||| || | |||| | ||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2014992 |
ttgtaaagggtcaacatc---agatgctgaaagatatgcagcattggctgtattacttggtgatcttacaacccataagaatttatgattactcaattcc |
2015088 |
T |
|
| Q |
307 |
aaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaacaaggctgctgtttatctaaccatg |
406 |
Q |
| |
|
||||| | ||| ||||||| |||||||||||| ||||||| |||||||| || ||||| |||| || ||||||||||||| | ||||| || ||||||| |
|
|
| T |
2015089 |
aaacccaaagccagctcattaatttgttcttgcgaaagtgttccaccactcccgaaagacacatacagaactgaacaaggccgttgtttgtccaaccatg |
2015188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 3 - 425
Target Start/End: Original strand, 2011383 - 2011808
Alignment:
| Q |
3 |
aactgcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgcatcgcgctctcaaggattgaattccaaccacaatgactcaag |
102 |
Q |
| |
|
|||||||||||||| ||| |||||||||| ||||||||||||||||||||| ||||| | | | || ||||| |||| |||||||||| ||||||||| |
|
|
| T |
2011383 |
aactgcattcattccctgttcagcaaacataggccatgtgattagtggcaccccatgaaccacactttcaagtgttgagctccaaccacagtgactcaag |
2011482 |
T |
|
| Q |
103 |
aatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataaccattccttgctccttggttctctccaagaacccagatggta |
202 |
Q |
| |
|
|| || |||||||| | ||||||||||||| |||||||||||||||||||| ||| || | |||| ||| |||||||||||||| ||||||||||||| |
|
|
| T |
2011483 |
aacccgccaactgaactatgactaaggatttgaatctgaggtgcccatgatgtaatgacaaaaccttcctctttggttctctccaaaaacccagatggta |
2011582 |
T |
|
| Q |
203 |
aaaactgcgaaagatcaacatcgttttgtgctgaaagatatgcaccacttgctga---actacttggtgctcttacaacccataagaatttatgattact |
299 |
Q |
| |
|
|||| || || ||||||||| |||||||||||||||||||| || | | ||| |||||||||||||| |||||||||| |||||| |||||||| |
|
|
| T |
2011583 |
aaaattgtaaagcatcaacatcattttgtgctgaaagatatgctgcattagatgaactactacttggtgctcgcacaacccataggaatttctgattact |
2011682 |
T |
|
| Q |
300 |
caattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaacaaggctgctgtttatct |
399 |
Q |
| |
|
|||||||||||| | ||| |||||| |||||||||| |||||||||| ||||||||| || ||||| |||| |||||||||||||| || ||||| ||| |
|
|
| T |
2011683 |
caattccaaacccaaagccagctcaacaatttgttcgtgtgaaagtgtaccaccactaccgaaagacacatacaaaactgaacaagattgttgtttgtct |
2011782 |
T |
|
| Q |
400 |
aaccatgtcaaacactccataccatt |
425 |
Q |
| |
|
||||||| || |||||||| |||||| |
|
|
| T |
2011783 |
aaccatgacagacactccaaaccatt |
2011808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 3 - 425
Target Start/End: Complemental strand, 1965311 - 1964886
Alignment:
| Q |
3 |
aactgcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgcatcgcgctctcaaggattgaattccaaccacaatgactcaag |
102 |
Q |
| |
|
|||||||||||||| ||| |||||||||| ||||||||||||||||||||| ||||||| | | || |||||| |||| ||||||||||| ||||||||| |
|
|
| T |
1965311 |
aactgcattcattccctgttcagcaaacataggccatgtgattagtggcactccatgcaccacactttcaagggttgagttccaaccacagtgactcaag |
1965212 |
T |
|
| Q |
103 |
aatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataaccattccttgctccttggttctctccaagaacccagatggta |
202 |
Q |
| |
|
|| || |||| ||| | ||||||||||||| |||||||||||||||||||| ||| || | |||| |||||| ||||||||||| ||||||||||||| |
|
|
| T |
1965211 |
aaccctccaattgaactatgactaaggatttgaatctgaggtgcccatgatgtaatgacaaaacctttctccttcgttctctccaaaaacccagatggta |
1965112 |
T |
|
| Q |
203 |
aaaactgcgaaagatcaacatcgttttgtgctgaaagatatgcaccacttgctga---actacttggtgctcttacaacccataagaatttatgattact |
299 |
Q |
| |
|
|||| | | || | ||| | || |||||||||||||||||||| |||| | ||| |||||||||||||| |||||||||| |||||| |||||||| |
|
|
| T |
1965111 |
aaaatttcaaagggtcaccgtcattttgtgctgaaagatatgctgcactagatgaactactacttggtgctcacacaacccataggaatttctgattact |
1965012 |
T |
|
| Q |
300 |
caattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaacaaggctgctgtttatct |
399 |
Q |
| |
|
|||||| || || | ||| |||| | |||||||||| |||||||||| ||||||||| || ||||| |||| |||||||||||||| || ||||| ||| |
|
|
| T |
1965011 |
caattctaaccccagagccagctgaacaatttgttcgtgtgaaagtgtaccaccactcccgaaagacacatacaaaactgaacaagattgttgtttgtct |
1964912 |
T |
|
| Q |
400 |
aaccatgtcaaacactccataccatt |
425 |
Q |
| |
|
||||||| || |||||||| |||||| |
|
|
| T |
1964911 |
aaccatgacagacactccaaaccatt |
1964886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 9 - 343
Target Start/End: Complemental strand, 2437047 - 2436704
Alignment:
| Q |
9 |
attcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgcatcgcgctctcaaggattgaattccaaccacaatgactcaagaatcca |
108 |
Q |
| |
|
|||| |||||||||| ||||| ||||||||||||||||||||||||||||||| | | ||||||||| |||||||||| ||||| ||||||||||| ||| |
|
|
| T |
2437047 |
attcgttctctgctcggcaaaaagaggccatgtgattagtggcacaccatgcaccacactctcaagggttgaattccagccacagtgactcaagaaacca |
2436948 |
T |
|
| Q |
109 |
ccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataaccattccttgctccttggttctctccaagaacccagatggtaaaaact |
208 |
Q |
| |
|
||||||||| ||||||||||||||| || ||| ||||||||||||||||||||||| ||||| |||||||||||||| | ||||||| |||||||||| | |
|
|
| T |
2436947 |
ccaactgatctgtgactaaggatttgaacctgtggtgcccatgatggaataaccatcccttgatccttggttctctctatgaacccacatggtaaaaatt |
2436848 |
T |
|
| Q |
209 |
gcgaaagatcaacatcgttttgtgctgaaa--ga----tatgcaccacttgctgaactac---ttggtgctcttacaacccataagaatttatgattact |
299 |
Q |
| |
|
|| || | |||||||| ||||||||||||| || ||||| |||| | |||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2436847 |
gcaaagggtcaacatcattttgtgctgaaactgaaaagtatgctgcactagatgaactactatttggtgctcttacaacccataagaatttctgattact |
2436748 |
T |
|
| Q |
300 |
caattccaaaccaatagctagctcatcaatttgttcttgtgaaa |
343 |
Q |
| |
|
| |||||| ||| | ||| |||||| |||||||||||||||||| |
|
|
| T |
2436747 |
cgattccagaccgaaagccagctcaacaatttgttcttgtgaaa |
2436704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 7 - 418
Target Start/End: Complemental strand, 1969249 - 1968829
Alignment:
| Q |
7 |
gcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgcatcgcgctctcaaggattgaattccaaccacaatgactcaagaatc |
106 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| | | ||||||||| |||||||||| ||||||||| ||||||||| |
|
|
| T |
1969249 |
gcattcattttctgctcagcaaacaaaggccatgtgattagtggcacaccatgcaacacactctcaagggttgaattccagccacaatgagtcaagaatc |
1969150 |
T |
|
| Q |
107 |
caccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataaccattccttgctccttggttctctccaagaaccc------agatgg |
200 |
Q |
| |
|
|||||| ||| ||||||| ||||||| |||||| || |||||||||| |||||| | |||| |||||||||||||||||||||||| |||||| |
|
|
| T |
1969149 |
caccaattgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatccagatgg |
1969050 |
T |
|
| Q |
201 |
taaaaactgcgaaagatcaacatcgttttgtgctgaaagatatgcaccacttgctgaa---ctacttggtgctcttacaacccataagaatttatgatta |
297 |
Q |
| |
|
|||||||||| || |||| ||| |||| ||||||||||||| | |||| | |||| ||||| ||||||| | |||||| ||||||| | |||| |
|
|
| T |
1969049 |
taaaaactgcaaagtgtcaatatcattttctgctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacgagaattttttatta |
1968950 |
T |
|
| Q |
298 |
ctcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaacaaggctgctgtttat |
397 |
Q |
| |
|
|||||||||||||| | ||| ||||| |||||||||| |||||||||| ||||||||| || ||||| |||| ||||||||| |||||||||||||||| |
|
|
| T |
1968949 |
ctcaattccaaacctaaagccagctccacaatttgttcgtgtgaaagtgtaccaccactcccgaaagatacatacaaaactgagcaaggctgctgtttat |
1968850 |
T |
|
| Q |
398 |
ctaaccatgtcaaacactcca |
418 |
Q |
| |
|
| ||||| | || |||||||| |
|
|
| T |
1968849 |
ccaaccaggccagacactcca |
1968829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 7 - 407
Target Start/End: Original strand, 2004392 - 2004795
Alignment:
| Q |
7 |
gcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgcatcgcgctctcaaggattgaattccaaccacaatgactcaagaatc |
106 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||| | | ||||| ||| |||||||||| ||||||||| ||||||| | |
|
|
| T |
2004392 |
gcattcattttctgctcagcaaatagaggccatgttattagtggcacaccatgcaccacactctctagggttgaattccagccacaatgagtcaagaacc |
2004491 |
T |
|
| Q |
107 |
caccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataaccattccttgctccttggttctctccaagaacccagatggtaaaaa |
206 |
Q |
| |
|
| || ||||| ||||||| ||||||| |||||| || ||||||||| ||| || | |||| |||||||||||||||||||||||| ||||| ||||| |
|
|
| T |
2004492 |
cgccgactgagttgtgacttaggatttgaatctgcggcacccatgatgtaatgacaaaacctttctccttggttctctccaagaacccggatggcaaaaa |
2004591 |
T |
|
| Q |
207 |
ctgcgaaagatcaacatcgttttgtgctgaaagatatgcaccacttgctga---actacttggtgctcttacaacccataagaatttatgattactcaat |
303 |
Q |
| |
|
|||| || ||| |||| ||||||||||||| |||| | |||| | ||| |||||||||||||| | |||||| |||||| | | |||||||||| |
|
|
| T |
2004592 |
ctgccaagtgtcagcatcattttgtgctgaaaaatatcctgcactagatgaactactacttggtgctcgcaaaacccacaagaatatcttattactcaat |
2004691 |
T |
|
| Q |
304 |
tccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaacaaggctgctgtttatctaacc |
403 |
Q |
| |
|
|||||||| | ||| |||||| ||||||||||||||||||||| ||| ||||| |||||||| |||| ||||||||||||||| ||||||||||| |||| |
|
|
| T |
2004692 |
tccaaacccaaagccagctcaacaatttgttcttgtgaaagtgtaccgccactcccaaaagacacatacaaaactgaacaaggttgctgtttatccaacc |
2004791 |
T |
|
| Q |
404 |
atgt |
407 |
Q |
| |
|
|||| |
|
|
| T |
2004792 |
atgt |
2004795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 7 - 418
Target Start/End: Original strand, 2007772 - 2008186
Alignment:
| Q |
7 |
gcattcattctctgctcagcaaacagaggccatgtgattagtggcacaccatgcatcgcgctctcaaggattgaattccaaccacaatgactcaagaatc |
106 |
Q |
| |
|
||||||||| ||||||||||||| |||||||| ||||||| |||||||| |||| | | ||||||||| |||||||||| |||||||| ||||||| | |
|
|
| T |
2007772 |
gcattcattttctgctcagcaaatagaggccacgtgattaacggcacaccgtgcaccacactctcaagggttgaattccagccacaatgcgtcaagaacc |
2007871 |
T |
|
| Q |
107 |
caccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataaccattccttgctccttggttctctccaagaacccagatggtaaaaa |
206 |
Q |
| |
|
|||||||||| ||||||| ||||||| |||||| || |||||||||| |||||| | |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2007872 |
caccaactgagttgtgacttaggatttgaatctgcggcgcccatgatgtaataacaaaacctttctccttggttctctccaagaacccagatggtaaaaa |
2007971 |
T |
|
| Q |
207 |
ctgcgaaagatcaacatcgttttgtgctgaaagatatgcaccacttgctgaa---ctacttggtgctcttacaacccataagaatttatgattactcaat |
303 |
Q |
| |
|
|||| || |||| ||| |||| ||||||||||||| | |||| | |||| ||||| ||||||| | |||||| |||||||| |||||||||| |
|
|
| T |
2007972 |
ctgcaaagtgtcaatatcattttctgctgaaagatatcctgcactagatgaactgctactcggtgctcgcaaaacccacaagaattttgtattactcaat |
2008071 |
T |
|
| Q |
304 |
tccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaacaaggctgctgtttatctaacc |
403 |
Q |
| |
|
|||||||| | ||||||||| ||||||| || |||||||||| ||| ||||| |||||||| |||| |||||| |||||||| ||||||||||| |||| |
|
|
| T |
2008072 |
tccaaacccaaagctagctccacaatttgctcctgtgaaagtgtacctccactcccaaaagatacatacaaaaccgaacaaggttgctgtttatccaacc |
2008171 |
T |
|
| Q |
404 |
atgtcaaacactcca |
418 |
Q |
| |
|
| | || |||||||| |
|
|
| T |
2008172 |
aggccagacactcca |
2008186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 367
Target Start/End: Original strand, 560656 - 560747
Alignment:
| Q |
276 |
aacccataagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaa |
367 |
Q |
| |
|
||||||||| |||||||| || || | |||||| || | || ||||||| |||||| ||||||||||||| || |||||||||||||||| |
|
|
| T |
560656 |
aacccataaaaatttatggttgctaagttccaatcccaaggcaagctcattaatttggtcttgtgaaagtgtgcccccacttccaaaagaaa |
560747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 204
Target Start/End: Complemental strand, 906140 - 906020
Alignment:
| Q |
84 |
ccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatggaataaccattccttgctccttggttctc |
183 |
Q |
| |
|
|||||||||||||||||| || ||||||| |||| |||| ||| || |||| || |||||||||||||||| ||||| ||| | || ||| |||| |
|
|
| T |
906140 |
ccaaccacaatgactcaaaaacccaccaattgatccatgaccaagaatctcaacttgtggtgcccatgatggaacaaccaatccattttctttgtttctt |
906041 |
T |
|
| Q |
184 |
tccaagaacccagatggtaaa |
204 |
Q |
| |
|
|||||||| ||| ||||||| |
|
|
| T |
906040 |
tccaagaaaccatttggtaaa |
906020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 261 - 377
Target Start/End: Original strand, 15380 - 15496
Alignment:
| Q |
261 |
acttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttcca |
360 |
Q |
| |
|
|||||||||||| |||||||| | |||| | ||| ||||||||||||||||| |||||| |||| |||||| ||| ||||||| |||||||||||| |
|
|
| T |
15380 |
acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcatttatttgtgtttgagaaagtgttccaccacttcca |
15479 |
T |
|
| Q |
361 |
aaagaaacattcaaaac |
377 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
15480 |
aaagaaacatacaaaac |
15496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 369
Target Start/End: Original strand, 11840 - 11940
Alignment:
| Q |
269 |
ctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaac |
368 |
Q |
| |
|
|||||| ||||||||| || || ||| ||| |||||||| |||| ||||| ||||| || ||||||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
11840 |
ctcttaaaacccataaaaacttttgaccacttaattccaacccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaatgaaac |
11939 |
T |
|
| Q |
369 |
a |
369 |
Q |
| |
|
| |
|
|
| T |
11940 |
a |
11940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 154
Target Start/End: Original strand, 15200 - 15276
Alignment:
| Q |
78 |
tgaattccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatg |
154 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| | || |||| ||||||| |||||||||||||||| |
|
|
| T |
15200 |
tgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccatgatg |
15276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 49; Significance: 7e-19; HSPs: 6)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 261 - 377
Target Start/End: Complemental strand, 2921 - 2805
Alignment:
| Q |
261 |
acttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttcca |
360 |
Q |
| |
|
|||||||||||| |||||||| | |||| | ||| ||||||||||||||||| |||||| |||| || ||| ||||||||||| |||||||||||| |
|
|
| T |
2921 |
acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattcatctgtctttgtgaaagtgttccaccacttcca |
2822 |
T |
|
| Q |
361 |
aaagaaacattcaaaac |
377 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
2821 |
aaagaaacatacaaaac |
2805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 297 - 381
Target Start/End: Complemental strand, 22139 - 22055
Alignment:
| Q |
297 |
actcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaactgaa |
381 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| ||| ||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
22139 |
actcaattccaaaccaaaagctagctcattgatttgtgtttgagaaagtgttccaccacttccaaaagaaacatacaaaactgaa |
22055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 261 - 377
Target Start/End: Complemental strand, 57464 - 57348
Alignment:
| Q |
261 |
acttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttcca |
360 |
Q |
| |
|
|||||||||||| |||||||| | |||| | ||| ||||||||||||||||| |||||| |||| |||||| ||| ||||||| |||||||||||| |
|
|
| T |
57464 |
acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcatttatttgtgtttgagaaagtgttccaccacttcca |
57365 |
T |
|
| Q |
361 |
aaagaaacattcaaaac |
377 |
Q |
| |
|
|||||||||| |||||| |
|
|
| T |
57364 |
aaagaaacatacaaaac |
57348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 57644 - 57568
Alignment:
| Q |
78 |
tgaattccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatg |
154 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| | || |||| ||||||| |||||||||||||||| |
|
|
| T |
57644 |
tgaattccaaccacaatgacttaaaaatccaccaactgaactatgtttaagtatttcaacttgaggtgcccatgatg |
57568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 369
Target Start/End: Complemental strand, 61004 - 60904
Alignment:
| Q |
269 |
ctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaac |
368 |
Q |
| |
|
|||||| ||||||||| || || ||| ||| |||||||| |||| ||||| ||||| || ||||||||| ||||||| |||||||||||||| ||||| |
|
|
| T |
61004 |
ctcttaaaacccataaaaacttttgaccacttaattccaacccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaatgaaac |
60905 |
T |
|
| Q |
369 |
a |
369 |
Q |
| |
|
| |
|
|
| T |
60904 |
a |
60904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 155
Target Start/End: Complemental strand, 3100 - 3024
Alignment:
| Q |
79 |
gaattccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatgg |
155 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| | || | || ||||||| ||||||||||||||||| |
|
|
| T |
3100 |
gaattccaaccacaatgacttaaaaatccaccaactgaattttgctttagtatttcaacttgaggtgcccatgatgg |
3024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 377
Target Start/End: Complemental strand, 16566542 - 16566461
Alignment:
| Q |
296 |
tactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaac |
377 |
Q |
| |
|
|||||||||||||||||| ||||| |||| ||| ||| ||| ||||||| ||| |||||||||||||||||| |||||| |
|
|
| T |
16566542 |
tactcaattccaaaccaaaggctagttcattaatctgtctttgagaaagtgttccaacacttccaaaagaaacatacaaaac |
16566461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 377
Target Start/End: Original strand, 16599120 - 16599201
Alignment:
| Q |
296 |
tactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttccaaaagaaacattcaaaac |
377 |
Q |
| |
|
|||||||||||||||||| ||||| |||| ||| ||| ||| ||||||| ||| |||||||||||||||||| |||||| |
|
|
| T |
16599120 |
tactcaattccaaaccaaaggctagttcattaatctgtctttgagaaagtgttccaacacttccaaaagaaacatacaaaac |
16599201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 155
Target Start/End: Complemental strand, 16566756 - 16566680
Alignment:
| Q |
79 |
gaattccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatgg |
155 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| | || | || ||||||| ||||||||||||||||| |
|
|
| T |
16566756 |
gaattccaaccacaatgacttaaaaatccaccaactgaattttgctttagtatttcaacttgaggtgcccatgatgg |
16566680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 155
Target Start/End: Original strand, 16598906 - 16598982
Alignment:
| Q |
79 |
gaattccaaccacaatgactcaagaatccaccaactgatatgtgactaaggatttcaatctgaggtgcccatgatgg |
155 |
Q |
| |
|
|||||||||||||||||||| || |||||||||||||| | || | || ||||||| ||||||||||||||||| |
|
|
| T |
16598906 |
gaattccaaccacaatgacttaaaaatccaccaactgaattttgctttagtatttcaacttgaggtgcccatgatgg |
16598982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0891 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0891
Description:
Target: scaffold0891; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 117
Target Start/End: Complemental strand, 3467 - 3429
Alignment:
| Q |
79 |
gaattccaaccacaatgactcaagaatccaccaactgat |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
3467 |
gaattccaaccacaatgagtcaagaatcccccaactgat |
3429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 35848405 - 35848443
Alignment:
| Q |
79 |
gaattccaaccacaatgactcaagaatccaccaactgat |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
35848405 |
gaattccaaccacaatgagtcaagaatcccccaactgat |
35848443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 117
Target Start/End: Original strand, 35866076 - 35866114
Alignment:
| Q |
79 |
gaattccaaccacaatgactcaagaatccaccaactgat |
117 |
Q |
| |
|
|||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
35866076 |
gaattccaaccacaatgagtcaagaatcccccaactgat |
35866114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 260 - 365
Target Start/End: Original strand, 8294628 - 8294733
Alignment:
| Q |
260 |
tacttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagctagctcatcaatttgttcttgtgaaagtgcaccaccacttcc |
359 |
Q |
| |
|
||||||| ||||| |||||||| |||||||| ||| ||||||||| | ||||| ||||| ||| | | ||| ||||| || |||| ||||||||||| |
|
|
| T |
8294628 |
tacttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttcc |
8294727 |
T |
|
| Q |
360 |
aaaaga |
365 |
Q |
| |
|
|||||| |
|
|
| T |
8294728 |
aaaaga |
8294733 |
T |
|
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