View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6088_low_9 (Length: 382)
Name: NF6088_low_9
Description: NF6088
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6088_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 6e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 41348378 - 41348628
Alignment:
| Q |
1 |
catatataaagagaaaacagtcaactctttcttaattcatcatctatttttagttgttaaaatcaagtaannnnnnnnnggacgtgctaacttatgcctn |
100 |
Q |
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| T |
41348378 |
catatataaagagaaaacagtcaactctttcttaattcatcatctatttttagttgttaaaatcaagtaatttttttt-ggacgtgctaccttatgccta |
41348476 |
T |
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| Q |
101 |
nnnnnnnnnnnntaaacagatgaaatcttcgtgtacctatagaataagtatacaggtaaaatcagctctaatgaaagaaattagaagccaataaaattct |
200 |
Q |
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| T |
41348477 |
aaaaaacaaaaataaacagatgaaatcttcgtgtacctatagaataagtatacaggtaaaatcagctctaatgaaagaaattagaagccaataaaattct |
41348576 |
T |
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| Q |
201 |
gttttattgcacttattttttatactatcggttagcttatctgtgttgtact |
252 |
Q |
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| T |
41348577 |
gttttattgcacttattttttatactatcggttagcatatctgtgttgtact |
41348628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 41348686 - 41348741
Alignment:
| Q |
309 |
ttgagaggagatgaaaagtgcagtagataagagtgtgtcagcaaagagtggcaaac |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41348686 |
ttgagaggagatgaaaagtgcagtagataagagtgtgtcagcaaagagtggcaaac |
41348741 |
T |
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