View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6089_high_3 (Length: 408)
Name: NF6089_high_3
Description: NF6089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6089_high_3 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 408
Target Start/End: Complemental strand, 6583744 - 6583337
Alignment:
| Q |
1 |
aatatacaatttaaatttgaaacaattttccaataatccattttcataagacacgtaaatccttgactctagtttcttgaacaaaattgacataaatatt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6583744 |
aatacacaatttaaatttgaaacaattttccaataatccattttcataagacacattaatccttgactctagtttcttgaacaaaattgacataaatatt |
6583645 |
T |
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| Q |
101 |
ctgaatccggctaccatgcactaccatggagggatttccgacatttacaagtcgccacatcgtgaccattcaatgatcaagatcgaccagtttatattca |
200 |
Q |
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| T |
6583644 |
ctggatccggctaccatgcactaccatgcagggatttccgacatttacaagtcgccacatcgtgaccattcgatgatcaagattgaccggtttatattca |
6583545 |
T |
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| Q |
201 |
aacttggtattttgaattataaaactacatgttgta-nnnnnnnnaccgttcaatcttgatttgtatatctcaactacgtgaatgtgtgatttcctgatg |
299 |
Q |
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| T |
6583544 |
aacttggtattttgaaatataaaactacaagctgtatttttttttaccgttcaatgttga-ttgtatatctcaactacgtgaatgtgtgatttcctgatg |
6583446 |
T |
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| Q |
300 |
gcaggaaatcactagattttactcgtccggtgggtgatgatctccttgttgttgttgattgaaaagatgagaagcataataagggaattcagcatcactt |
399 |
Q |
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| T |
6583445 |
gcaggaaatcactagattttactcgtccggtgggtgaggatctccttcttgttgttgattgaaaagatgagaagcataataagggaattcagcatcactt |
6583346 |
T |
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| Q |
400 |
tctagaatc |
408 |
Q |
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| T |
6583345 |
tctagaatc |
6583337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 265 - 408
Target Start/End: Complemental strand, 6569321 - 6569178
Alignment:
| Q |
265 |
atatctcaactacgtgaatgtgtgatttcctgatggcaggaaatcactagattttactcgtccggtgggtgatgatctccttgttgttgttgattgaaaa |
364 |
Q |
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|||||||||||| ||||||||| ||||||||||| |||||||||| ||||| | |||||| ||||||||||| ||||||||||||||||||||||||||| |
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| T |
6569321 |
atatctcaactatgtgaatgtgagatttcctgattgcaggaaatctctagagtctactcgcccggtgggtgacgatctccttgttgttgttgattgaaaa |
6569222 |
T |
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| Q |
365 |
gatgagaagcataataagggaattcagcatcactttctagaatc |
408 |
Q |
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| T |
6569221 |
gatgagaagcataataagggaattcagcatcactttctagaatc |
6569178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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