View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6089_high_7 (Length: 266)
Name: NF6089_high_7
Description: NF6089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6089_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 17952072 - 17951810
Alignment:
| Q |
1 |
aaaatcaaatggacattaaattataaagaaaactggcagaaccttcacatacaggatataaaactgttcaatgagcaaaaactttaacaccaagtgaaaa |
100 |
Q |
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| T |
17952072 |
aaaatcaaatggacattaaattataaagaaaactggcagaaccttcacatacaggatataaaactgttcaatgagcaaaaactttaacaccaagtgaaaa |
17951973 |
T |
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| Q |
101 |
attaattctttatcaactatcatttttatcactttctgaaaagtctgaaaatagttttattgatgttacttttctggacaattagtttttaaaaattaga |
200 |
Q |
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| T |
17951972 |
attaattctttatcaactatcatttttatcactttctgaaaagtctgaaaatagtttaattgatgttacttttctggacaattagtttttaaaaattaga |
17951873 |
T |
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| Q |
201 |
agagagaccaaacca-------------aaaagaaagcaaacaacacagtacaacaatattaa |
250 |
Q |
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| T |
17951872 |
agagagaccaaaccaatacctctagaacaaaagaaagcaaacaacacagtacaacaatattaa |
17951810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 18110686 - 18110484
Alignment:
| Q |
1 |
aaaatcaaatggacattaaattataaagaaaactggcagaaccttcacatacaggatataaaactgttcaatgagcaaaaactttaacaccaagtgaaaa |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
18110686 |
aaaatcaaatggacattaaattattaagaaaactggcagaaccttcacatacaagatataaaactgttcaatgagcaaaaac-ttaacaccaagtgaaaa |
18110588 |
T |
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| Q |
101 |
attaattctttatcaactatcatttttatcactttctgaaaagtctgaaaatagttttattgatgttacttttctggacaattagtttttaaaaattaga |
200 |
Q |
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| T |
18110587 |
atgaattctttatca---------tatatcactttctgaaaattctgaaaatagttttattgatgttacttttcaggacaattagtttttaaaaattaga |
18110497 |
T |
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| Q |
201 |
agagagaccaaac |
213 |
Q |
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| T |
18110496 |
agagagaccaaac |
18110484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 19401811 - 19401753
Alignment:
| Q |
116 |
actatcatttttatcactttctgaaaagtctgaaaatagttttattgatgttacttttc |
174 |
Q |
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| T |
19401811 |
actatcatttttatcactttctgaaaattcttaatatagttttattgatgttacttttc |
19401753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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