View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6089_high_8 (Length: 262)

Name: NF6089_high_8
Description: NF6089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6089_high_8
NF6089_high_8
[»] chr7 (16 HSPs)
chr7 (1-254)||(42695898-42696148)
chr7 (178-254)||(45637701-45637777)
chr7 (188-254)||(15577850-15577916)
chr7 (189-254)||(4974735-4974800)
chr7 (189-254)||(20010098-20010162)
chr7 (189-254)||(42611811-42611876)
chr7 (187-254)||(15329271-15329338)
chr7 (189-252)||(24394972-24395035)
chr7 (189-254)||(3961979-3962044)
chr7 (189-254)||(34482835-34482900)
chr7 (186-254)||(37477080-37477148)
chr7 (189-254)||(48880927-48880992)
chr7 (188-254)||(18036977-18037043)
chr7 (188-254)||(35444557-35444623)
chr7 (189-254)||(25167850-25167915)
chr7 (192-253)||(36790467-36790528)
[»] chr4 (22 HSPs)
chr4 (187-254)||(23964465-23964532)
chr4 (187-254)||(10442789-10442856)
chr4 (187-254)||(44893424-44893491)
chr4 (188-254)||(31078819-31078885)
chr4 (189-254)||(2624837-2624902)
chr4 (189-254)||(22199261-22199326)
chr4 (189-254)||(49387888-49387953)
chr4 (190-254)||(7745112-7745176)
chr4 (187-254)||(21802322-21802389)
chr4 (187-254)||(24128237-24128304)
chr4 (189-252)||(36072947-36073010)
chr4 (187-254)||(47290064-47290131)
chr4 (188-254)||(33530688-33530754)
chr4 (188-252)||(4751445-4751509)
chr4 (186-254)||(36073347-36073415)
chr4 (187-254)||(24392665-24392732)
chr4 (187-254)||(50156578-50156645)
chr4 (188-254)||(53123029-53123096)
chr4 (198-254)||(42671678-42671734)
chr4 (188-239)||(37934956-37935007)
chr4 (188-254)||(44893213-44893280)
chr4 (189-254)||(46441844-46441909)
[»] chr2 (13 HSPs)
chr2 (187-253)||(13354844-13354910)
chr2 (189-254)||(21936081-21936146)
chr2 (182-254)||(23268062-23268134)
chr2 (188-254)||(35160756-35160822)
chr2 (185-254)||(43330908-43330977)
chr2 (190-254)||(10661888-10661952)
chr2 (187-254)||(9293576-9293643)
chr2 (187-254)||(31174834-31174901)
chr2 (194-254)||(22591487-22591547)
chr2 (189-254)||(33380207-33380272)
chr2 (188-239)||(7475523-7475574)
chr2 (188-254)||(14941366-14941432)
chr2 (192-221)||(40262719-40262748)
[»] scaffold0096 (1 HSPs)
scaffold0096 (181-254)||(41003-41076)
[»] chr8 (24 HSPs)
chr8 (186-253)||(15187557-15187624)
chr8 (187-254)||(39772801-39772868)
chr8 (185-254)||(42755042-42755111)
chr8 (178-254)||(26042116-26042192)
chr8 (186-254)||(37986055-37986123)
chr8 (179-254)||(17841850-17841925)
chr8 (187-254)||(32064743-32064810)
chr8 (188-254)||(41819778-41819844)
chr8 (189-254)||(30835047-30835111)
chr8 (189-254)||(32393858-32393923)
chr8 (189-254)||(34665382-34665447)
chr8 (181-254)||(35353033-35353106)
chr8 (190-254)||(14128865-14128929)
chr8 (187-254)||(1645965-1646032)
chr8 (187-254)||(6108233-6108300)
chr8 (187-254)||(40780129-40780196)
chr8 (189-254)||(20091801-20091866)
chr8 (189-254)||(24211553-24211618)
chr8 (198-254)||(38016980-38017036)
chr8 (199-254)||(7021988-7022043)
chr8 (187-254)||(31347782-31347849)
chr8 (189-254)||(37132658-37132723)
chr8 (201-254)||(3596848-3596900)
chr8 (186-254)||(7017865-7017933)
[»] chr6 (15 HSPs)
chr6 (187-254)||(18365573-18365640)
chr6 (187-254)||(18370837-18370904)
chr6 (186-254)||(6127272-6127340)
chr6 (187-254)||(23291084-23291151)
chr6 (188-254)||(33695327-33695393)
chr6 (188-254)||(33696695-33696761)
chr6 (184-254)||(17176021-17176091)
chr6 (185-254)||(2309423-2309492)
chr6 (189-254)||(17705465-17705530)
chr6 (187-239)||(28675146-28675198)
chr6 (200-254)||(32702216-32702270)
chr6 (189-254)||(6031741-6031806)
chr6 (188-253)||(18889698-18889762)
chr6 (189-254)||(25986930-25986995)
chr6 (187-254)||(9752245-9752311)
[»] chr5 (16 HSPs)
chr5 (184-254)||(14138663-14138733)
chr5 (187-254)||(2477634-2477701)
chr5 (187-254)||(8145373-8145440)
chr5 (189-254)||(11361131-11361196)
chr5 (186-254)||(6043511-6043579)
chr5 (187-254)||(4892200-4892267)
chr5 (189-254)||(3522006-3522071)
chr5 (189-254)||(4434007-4434072)
chr5 (189-254)||(25398238-25398303)
chr5 (189-254)||(33584329-33584394)
chr5 (188-252)||(3362777-3362841)
chr5 (188-252)||(38899728-38899792)
chr5 (189-254)||(37321793-37321859)
chr5 (189-254)||(22913054-22913119)
chr5 (189-252)||(12850801-12850864)
chr5 (188-221)||(13664641-13664674)
[»] chr3 (23 HSPs)
chr3 (184-254)||(3574527-3574597)
chr3 (189-254)||(3456064-3456129)
chr3 (189-254)||(8320584-8320649)
chr3 (189-254)||(48160905-48160970)
chr3 (187-254)||(2754715-2754782)
chr3 (187-253)||(11347266-11347332)
chr3 (189-254)||(19650900-19650965)
chr3 (189-254)||(37217053-37217118)
chr3 (187-254)||(34482910-34482977)
chr3 (188-254)||(22426344-22426410)
chr3 (189-254)||(6041884-6041949)
chr3 (189-254)||(33145713-33145777)
chr3 (190-254)||(9797029-9797093)
chr3 (186-254)||(33113790-33113858)
chr3 (187-254)||(3137414-3137481)
chr3 (187-254)||(33839529-33839596)
chr3 (188-239)||(42297352-42297403)
chr3 (189-254)||(30385011-30385076)
chr3 (188-252)||(26612784-26612848)
chr3 (187-254)||(37522051-37522118)
chr3 (185-220)||(47402630-47402665)
chr3 (186-254)||(24343544-24343612)
chr3 (201-253)||(47738117-47738169)
[»] scaffold0665 (1 HSPs)
scaffold0665 (181-254)||(3060-3133)
[»] chr1 (16 HSPs)
chr1 (177-254)||(19015392-19015469)
chr1 (187-254)||(3559615-3559682)
chr1 (185-239)||(25973410-25973464)
chr1 (188-254)||(41876442-41876508)
chr1 (189-254)||(36966708-36966773)
chr1 (189-254)||(37821834-37821899)
chr1 (189-254)||(40214988-40215053)
chr1 (187-254)||(16045798-16045865)
chr1 (187-254)||(18404440-18404507)
chr1 (187-254)||(25463674-25463741)
chr1 (189-254)||(9910293-9910358)
chr1 (189-254)||(44094698-44094763)
chr1 (189-254)||(6883487-6883552)
chr1 (188-216)||(10167414-10167442)
chr1 (189-253)||(44691030-44691094)
chr1 (189-221)||(52329319-52329351)
[»] scaffold0471 (1 HSPs)
scaffold0471 (187-254)||(12840-12907)
[»] scaffold0204 (2 HSPs)
scaffold0204 (187-254)||(4394-4461)
scaffold0204 (201-254)||(4602-4654)
[»] scaffold0178 (2 HSPs)
scaffold0178 (189-254)||(11621-11686)
scaffold0178 (193-254)||(11827-11887)
[»] scaffold0085 (1 HSPs)
scaffold0085 (189-254)||(47850-47915)
[»] scaffold0228 (3 HSPs)
scaffold0228 (200-254)||(8413-8467)
scaffold0228 (200-254)||(15995-16049)
scaffold0228 (200-254)||(25947-26001)


Alignment Details
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 42695898 - 42696148
Alignment:
Q  1 ttacttcaatggaaaattcaaaagaatacnnnnnnnntcattccaatagatgatagtataaagtgttctcaattaatcatagaataaataaacacattaa 100  Q
    |||||||||||||||||||||||||||||        |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42695898 ttacttcaatggaaaattcaaaagaatacaaaaaa--tcattcca-tagatgatagtataaagtgttctcaattaatcatagaataaataaacacattaa 42695994  T
Q  101 ccaaaactatcaagtaatcaagccgttagtataaatgaataataatgaaagttcatcgaactaactaacacttgcataataaaaataagagcaatgttat 200  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||||    
T  42695995 ccaaaactattaagtaatcaagccgttagtataaatgaataataatgaaagttcatcgaattaaccaacacttgcatagtaaaaataagagcaatgttat 42696094  T
Q  201 atatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||||||||||| | |||  ||| |||||||| ||||||||||||||    
T  42696095 atatcaagaaagattttattaaaaattttttaagaatgacatagcagaataatc 42696148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 178 - 254
Target Start/End: Original strand, 45637701 - 45637777
Alignment:
Q  178 aataaaaataagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||||||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  45637701 aataaaaataagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 45637777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 15577916 - 15577850
Alignment:
Q  188 agagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  15577916 agagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 15577850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 4974800 - 4974735
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  4974800 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 4974735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 20010162 - 20010098
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| |||||||||||||||||||||||| |||||||| |||||||| ||| ||||||||||    
T  20010162 gagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacata-cagaataatc 20010098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 42611811 - 42611876
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  42611811 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 42611876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 15329271 - 15329338
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| ||||||||||||||||||||||||  ||||||| |||||||| ||  ||||||||||    
T  15329271 aagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 15329338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 24394972 - 24395035
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataa 252  Q
    |||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||    
T  24394972 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataa 24395035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 3961979 - 3962044
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||||||||||||||||||||||||  ||||||| |||||||| ||  ||||||||||    
T  3961979 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatgacagaataatc 3962044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 34482835 - 34482900
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| |||||||||||||||||||||| |  ||||||| |||||||| || |||||||||||    
T  34482835 gagcaatgctatatatcaagaaagattttattaagaaaattttaagaatgacatggcagaataatc 34482900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 37477148 - 37477080
Alignment:
Q  186 taagagcaatgttatatatcaagaaagattttatca-gaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||| |||||||||||||||||||| ||| ||||||||||| |||||| || |||||||||||    
T  37477148 taagagcaatgctatatatcaagaaagattttctcaagaaaaatttaa-gaatgacatggcagaataatc 37477080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 48880992 - 48880927
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||||||||||||||||||||||||  ||||||| |||||||| ||  ||||||||||    
T  48880992 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 48880927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 18036977 - 18037043
Alignment:
Q  188 agagcaatgttatatatcaagaaagattttatc-agaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||| |||||||||||||||||||| || |||||||||| |||||||| || |||||||||||    
T  18036977 agagcaatgatatatatcaagaaagattttttcaagaaaaattt-aagaatgacatggcagaataatc 18037043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 35444557 - 35444623
Alignment:
Q  188 agagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||| ||||||| |||||||||||| |||  ||||||| |||||||| || |||||||||||    
T  35444557 agagcaatgctatatattaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 35444623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 25167915 - 25167850
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| |||||||||||||||||||| | |  ||||||| |||||||| || |||||||||||    
T  25167915 gagcaatgctatatatcaagaaagatttttttaagaaaattttaagaatgacatggcagaataatc 25167850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 253
Target Start/End: Complemental strand, 36790528 - 36790467
Alignment:
Q  192 caatgttatatatcaagaaagattttatc-agaaaaatttaaagaatgatatagcagaataat 253  Q
    ||||| ||||||||||||||| ||||||| |||||||||| |||||||| || ||||||||||    
T  36790528 caatgctatatatcaagaaagtttttatcaagaaaaattt-aagaatgacatggcagaataat 36790467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 23964532 - 23964465
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||| || |||||||||||    
T  23964532 aagagcaatgttatatatcaagaaagattttatcaaaaaaattttaagaatgacatggcagaataatc 23964465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 10442856 - 10442789
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  10442856 aagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 10442789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 44893424 - 44893491
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| |||||||||||||||||||| ||| |||||||| |||||||| || |||||||||||    
T  44893424 aagagcaatgctatatatcaagaaagattttttcaaaaaaatttcaagaatgacatggcagaataatc 44893491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 31078885 - 31078819
Alignment:
Q  188 agagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  31078885 agagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 31078819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 2624837 - 2624902
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  2624837 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgaaatggcagaataatc 2624902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 22199261 - 22199326
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  22199261 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 22199326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 49387953 - 49387888
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  49387953 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 49387888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 7745176 - 7745112
Alignment:
Q  190 agcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  7745176 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 7745112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 21802389 - 21802322
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| |||||||||||||| |||||||||  ||||||| |||||||| || |||||||||||    
T  21802389 aagagcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgacatggcagaataatc 21802322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 24128237 - 24128304
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| |||||||||||||||||||| |||  ||||||| |||||||| || |||||||||||    
T  24128237 aagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 24128304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 36072947 - 36073010
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataa 252  Q
    |||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||    
T  36072947 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataa 36073010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 47290064 - 47290131
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| |||||||||||||||||||| |||  ||||||| |||||||| || |||||||||||    
T  47290064 aagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 47290131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 33530754 - 33530688
Alignment:
Q  188 agagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||| ||||||||||||||||||||||||  |||| || |||||||| || |||||||||||    
T  33530754 agagcaatgctatatatcaagaaagattttatcaagaaaaattcaagaatgacatggcagaataatc 33530688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 4751445 - 4751509
Alignment:
Q  188 agagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataa 252  Q
    ||||||||| ||||||||||||||||||||||||  ||||||  |||||||| || |||||||||    
T  4751445 agagcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgacatggcagaataa 4751509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 36073347 - 36073415
Alignment:
Q  186 taagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||| |||| |||||||||||||||||||| |||  ||||||| |||||||| || |||||||||||    
T  36073347 taagaggaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 36073415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 24392665 - 24392732
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| |||||||||||||||||||| |||  |||| || |||||||| || |||||||||||    
T  24392665 aagagcaatgctatatatcaagaaagattttctcaagaaaaattcaagaatgacatggcagaataatc 24392732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 50156645 - 50156578
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| ||||||| |||||||||||| |||  ||||||| |||||||| || |||||||||||    
T  50156645 aagagcaatgctatatattaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 50156578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 53123029 - 53123096
Alignment:
Q  188 agagcaatgttatatatcaagaaagattttatcaga-aaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||| |||||||||||||||||||| ||| | ||||||| |||||||| || |||||||||||    
T  53123029 agagcaatgctatatatcaagaaagattttttcaaagaaaatttcaagaatgacatggcagaataatc 53123096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 42671678 - 42671734
Alignment:
Q  198 tatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| ||||||||||||| ||||| || |||||||| || |||||||||||    
T  42671678 tatatatcaataaagattttatcaaaaaaaatttaagaatgacatggcagaataatc 42671734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 37935007 - 37934956
Alignment:
Q  188 agagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatga 239  Q
    ||||||||| |||||||||| ||||||||||||| |||||| | ||||||||    
T  37935007 agagcaatgctatatatcaaaaaagattttatcaaaaaaatgtcaagaatga 37934956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 44893280 - 44893213
Alignment:
Q  188 agagcaatgttatatatcaagaaagattttatc-agaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||| ||||||| |||||||||||| || | |||||||| |||||||| || |||||||||||    
T  44893280 agagcaatgctatatattaagaaagattttttcaaaaaaaatttcaagaatgacatggcagaataatc 44893213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 46441844 - 46441909
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| |||||||||||||||||||| | |  ||||||| |||||||| || ||| |||||||    
T  46441844 gagcaatgctatatatcaagaaagatttttttaagaaaatttcaagaatgacatggcaaaataatc 46441909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 3e-20; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 13354844 - 13354910
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataat 253  Q
    |||||||||||||||||||||||||||||||||||  ||||||| ||||||||||| ||||||||||    
T  13354844 aagagcaatgttatatatcaagaaagattttatcaagaaaatttcaagaatgatatggcagaataat 13354910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 21936081 - 21936146
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||||||||||||||||||||||||  ||||||| ||||||||||| |||||||||||    
T  21936081 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgatatggcagaataatc 21936146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 182 - 254
Target Start/End: Complemental strand, 23268134 - 23268062
Alignment:
Q  182 aaaataagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||||||| |||||||||||||||||||| |||  ||||||| |||||||| || |||||||||||    
T  23268134 aaaataagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 23268062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 35160756 - 35160822
Alignment:
Q  188 agagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  35160756 agagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 35160822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 185 - 254
Target Start/End: Original strand, 43330908 - 43330977
Alignment:
Q  185 ataagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||||| |||||||||||||||||||| ||| ||||| || |||||||| || |||||||||||    
T  43330908 ataagagcaatgctatatatcaagaaagattttctcaaaaaaaattcaagaatgacatggcagaataatc 43330977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 10661888 - 10661952
Alignment:
Q  190 agcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  10661888 agcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 10661952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 9293643 - 9293576
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| ||||||||||||||||||||||||  ||| ||| |||||||| || |||||||||||    
T  9293643 aagagcaatgctatatatcaagaaagattttatcaagaaattttcaagaatgacatggcagaataatc 9293576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 31174901 - 31174834
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||| |||||||||||||||||||||||||||| |  ||||||| |||||||| || |||||||||||    
T  31174901 aagaacaatgttatatatcaagaaagattttattaagaaaatttcaagaatgacatggcagaataatc 31174834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 194 - 254
Target Start/End: Original strand, 22591487 - 22591547
Alignment:
Q  194 atgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||| ||||||||||||||||||| | ||||| || ||||||||||| |||||||||||    
T  22591487 atgttaaatatcaagaaagattttattaaaaaaaattcaagaatgatatggcagaataatc 22591547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 33380207 - 33380272
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| |||||||||||||||||||| |||  ||||||| |||||||| || || ||||||||    
T  33380207 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggctgaataatc 33380272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 239
Target Start/End: Complemental strand, 7475574 - 7475523
Alignment:
Q  188 agagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatga 239  Q
    ||||||||| |||||||||||||||||||| |||  ||||||| ||||||||    
T  7475574 agagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatga 7475523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 14941432 - 14941366
Alignment:
Q  188 agagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||| |||||||||||||||||||||| |  |||  || |||||||| || |||||||||||    
T  14941432 agagcaatgctatatatcaagaaagattttattaagaaagattcaagaatgacatggcagaataatc 14941366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 192 - 221
Target Start/End: Complemental strand, 40262748 - 40262719
Alignment:
Q  192 caatgttatatatcaagaaagattttatca 221  Q
    ||||||||||||||||||||||||||||||    
T  40262748 caatgttatatatcaagaaagattttatca 40262719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 41003 - 41076
Alignment:
Q  181 aaaaataagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||| |||||||||| |||||||||||||||||||||||| |||||||| |||||||| || |||||||||||    
T  41003 aaaaaaaagagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacatggcagaataatc 41076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 253
Target Start/End: Original strand, 15187557 - 15187624
Alignment:
Q  186 taagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataat 253  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||| ||||||||||| ||||||||||    
T  15187557 taagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgatatggcagaataat 15187624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 39772868 - 39772801
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||||||||||||||||| ||||||||| |||||||| |||||||| || |||||||||||    
T  39772868 aagagcaatgttatatatcaagaaatattttatcaaaaaaatttcaagaatgacatggcagaataatc 39772801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 42755111 - 42755042
Alignment:
Q  185 ataagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  42755111 ataagagcaatgatatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 42755042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 254
Target Start/End: Complemental strand, 26042192 - 26042116
Alignment:
Q  178 aataaaaataagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||  ||||||| |||||||| ||  ||||||||||    
T  26042192 aataaaaataagagcaatgctatatattaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 26042116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 37986123 - 37986055
Alignment:
Q  186 taagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||| |||| |||||||||||||||||||||||| |||||||| |||||||| || |||||||||||    
T  37986123 taagagtaatgctatatatcaagaaagattttatcaaaaaaattttaagaatgacatggcagaataatc 37986055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 17841925 - 17841850
Alignment:
Q  179 ataaaaataagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||| |||||||||| |||||||||||||||||||| |||  ||||||| |||||||| || |||||||||||    
T  17841925 ataaaaaaaagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 17841850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 32064743 - 32064810
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  32064743 aagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 32064810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 41819844 - 41819778
Alignment:
Q  188 agagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||||||||||||||||||||||||||  ||  ||| ||||||||||| |||||||||||    
T  41819844 agagcaatgttatatatcaagaaagattttatcaagaatgttttaagaatgatatggcagaataatc 41819778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 30835111 - 30835047
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||||||||||||||||||||||||| |||||| || |||||||| || |||||||||||    
T  30835111 gagcaatgttatatatcaagaaagattttatc-gaaaaaattcaagaatgacatggcagaataatc 30835047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 32393858 - 32393923
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  32393858 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 32393923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 34665382 - 34665447
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  34665382 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 34665447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 35353033 - 35353106
Alignment:
Q  181 aaaaataagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||| |||||||| |||||||||||||||||||| |||  ||||||| |||||||| || |||||||||||    
T  35353033 aaaaatatgagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 35353106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 254
Target Start/End: Original strand, 14128865 - 14128929
Alignment:
Q  190 agcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  14128865 agcaatgctatatatcaagaaagattttatcaataaaattttaagaatgacatggcagaataatc 14128929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 1646032 - 1645965
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| ||||||||||||||||||||||||  ||||||| ||||| || || |||||||||||    
T  1646032 aagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaaagacatggcagaataatc 1645965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 6108300 - 6108233
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||||||||||||||||||||||| | |  ||||||| |||||||| || |||||||||||    
T  6108300 aagagcaatgttatatatcaagaaagatttttttaagaaaattttaagaatgacatggcagaataatc 6108233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 40780196 - 40780129
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| |||||||||||||||||||| |||  ||||||| |||||||| || |||||||||||    
T  40780196 aagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 40780129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 20091866 - 20091801
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| |||||||||||||| |||||||||  ||||||| |||||||| || |||||||||||    
T  20091866 gagcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgacatggcagaataatc 20091801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 24211618 - 24211553
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||||||||||||||||||||||||  ||||||| |||||||  || |||||||||||    
T  24211618 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatggcatggcagaataatc 24211553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 254
Target Start/End: Original strand, 38016980 - 38017036
Alignment:
Q  198 tatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  38016980 tatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 38017036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 7021988 - 7022043
Alignment:
Q  199 atatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||||||||||| |||  |||| || ||||||||||| |||||||||||    
T  7021988 atatatcaagaaagattttctcaagaaaaattcaagaatgatatggcagaataatc 7022043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 31347849 - 31347782
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| |||||||||||||| ||||| |||  |||| || |||||||| || |||||||||||    
T  31347849 aagagcaatgctatatatcaagaaatattttctcaagaaaaattcaagaatgacatggcagaataatc 31347782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 37132723 - 37132658
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatca-gaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| |||||||||| ||| ||||||||| ||||||||||| |||||| || |||||||||||    
T  37132723 gagcaatgctatatatcaaaaaatattttatcaagaaaaatttaa-gaatgacatggcagaataatc 37132658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 3596848 - 3596900
Alignment:
Q  201 atatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| |||||||| |||||||||| ||||||||||| ||| |||||||    
T  3596848 atatcaagaatgattttataagaaaaattt-aagaatgatatggcacaataatc 3596900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 7017933 - 7017865
Alignment:
Q  186 taagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||| ||||||||| |||||||||| | |  |||| || |||||||| || |||||||||||    
T  7017933 taagagcaatgctatatatcatgaaagattttcttaagaaaaattcaagaatgacatggcagaataatc 7017865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 18365640 - 18365573
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| |||||||||||||||||||||||| |||||||| |||||||| || |||||||||||    
T  18365640 aagagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacatggcagaataatc 18365573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 18370904 - 18370837
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| |||||||||||||||||||||||| |||||||| |||||||| || |||||||||||    
T  18370904 aagagcaatgctatatatcaagaaagattttatcaaaaaaatttcaagaatgacatggcagaataatc 18370837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 6127272 - 6127340
Alignment:
Q  186 taagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  6127272 taagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 6127340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 23291151 - 23291084
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  23291151 aagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 23291084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 33695393 - 33695327
Alignment:
Q  188 agagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  33695393 agagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 33695327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 254
Target Start/End: Original strand, 33696695 - 33696761
Alignment:
Q  188 agagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  33696695 agagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 33696761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 17176091 - 17176021
Alignment:
Q  184 aataagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||| |||||||| ||||||||||||||||||||||||  ||||||| |||||||| ||  ||||||||||    
T  17176091 aatatgagcaatgctatatatcaagaaagattttatcaataaaatttcaagaatgacatgacagaataatc 17176021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 185 - 254
Target Start/End: Complemental strand, 2309492 - 2309423
Alignment:
Q  185 ataagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||||||||||||||||||||||||||||| ||   ||| |||||||  || |||||||||||    
T  2309492 ataagagcaatgttatatatcaagaaagattttatcaaaatttttttaagaatggcatggcagaataatc 2309423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 17705530 - 17705465
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||||||||||||||||||||||||  ||||||| |||||||| ||  ||||||||||    
T  17705530 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatgacagaataatc 17705465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 187 - 239
Target Start/End: Original strand, 28675146 - 28675198
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatga 239  Q
    |||||||||| ||||||||||||||||||||||||  ||||||| ||||||||    
T  28675146 aagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatga 28675198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 32702216 - 32702270
Alignment:
Q  200 tatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||||||||||| |||  ||||||| ||||||||||| |||||||||||    
T  32702216 tatatcaagaaagattttttcatgaaaatttcaagaatgatatggcagaataatc 32702270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 6031806 - 6031741
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||||||||||||||||||| ||||  ||||||| |||||||| ||  ||||||||||    
T  6031806 gagcaatgctatatatcaagaaagatttcatcaataaaattttaagaatgacatgacagaataatc 6031741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 18889762 - 18889698
Alignment:
Q  188 agagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataat 253  Q
    ||||||||| |||||||||||||||| |||||||  ||||||| |||||||| || ||||||||||    
T  18889762 agagcaatgctatatatcaagaaaga-tttatcaagaaaatttcaagaatgacatggcagaataat 18889698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 25986930 - 25986995
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| |||||||||||||||||||||| |  ||||||| |||||||| || ||| |||||||    
T  25986930 gagcaatgctatatatcaagaaagattttattaagaaaatttcaagaatgacatggcaaaataatc 25986995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 9752311 - 9752245
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||||||||||||||||| |  ||||||  |||| || ||||||||||| |||||||||||    
T  9752311 aagagcaatgttatatatcaagaaa-aaattatcaagaaaaattcaagaatgatatggcagaataatc 9752245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 14138663 - 14138733
Alignment:
Q  184 aataagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||||||||||||||||||||||||||||||  ||||||| |||||| | || |||||||||||    
T  14138663 aataagagcaatgttatatatcaagaaagattttatcaagaaaatttcaagaattacatggcagaataatc 14138733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 2477634 - 2477701
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  2477634 aagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 2477701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 8145373 - 8145440
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||| |||||||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  8145373 aagaggaatgttatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 8145440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 11361196 - 11361131
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  11361196 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 11361131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 186 - 254
Target Start/End: Complemental strand, 6043579 - 6043511
Alignment:
Q  186 taagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||| ||||||||||||||||||||||||  ||||||| |||||||| || | |||||||||    
T  6043579 taagagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggaagaataatc 6043511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 4892200 - 4892267
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| |||||||||||||||||||| |||  ||||||| |||||||| || |||||||||||    
T  4892200 aagagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 4892267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 3522071 - 3522006
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||||||||||||||||||||| |||  ||||||| || ||||| || |||||||||||    
T  3522071 gagcaatgttatatatcaagaaagattttttcaagaaaatttcaaaaatgacatggcagaataatc 3522006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 4434072 - 4434007
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| |||||||||||||||||||| | |  ||||||| ||||||||||| |||||||||||    
T  4434072 gagcaatgctatatatcaagaaagatttttttaagaaaatttcaagaatgatatggcagaataatc 4434007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 25398238 - 25398303
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| |||||||||||||||||||| |||  ||||||| |||||||| || |||||||||||    
T  25398238 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 25398303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 33584394 - 33584329
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| |||||||||||||||||||| |||  ||||||| |||||||| || |||||||||||    
T  33584394 gagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 33584329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 3362777 - 3362841
Alignment:
Q  188 agagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataa 252  Q
    ||||||||| ||||||||||||||||||||||||  ||||||  |||||||| || |||||||||    
T  3362777 agagcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgacatggcagaataa 3362841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 38899792 - 38899728
Alignment:
Q  188 agagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataa 252  Q
    ||||||||| ||||||||||||||||||||||||  ||||||  |||||||| || |||||||||    
T  38899792 agagcaatgctatatatcaagaaagattttatcaagaaaattccaagaatgacatggcagaataa 38899728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 37321859 - 37321793
Alignment:
Q  189 gagcaatgttatatatc-aagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| |||||||| ||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  37321859 gagcaatgctatatatctaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 37321793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 22913119 - 22913054
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| |||||||||||||||||||| |||  |||| || |||||||| || |||||||||||    
T  22913119 gagcaatgctatatatcaagaaagattttttcaagaaaaattcaagaatgacatggcagaataatc 22913054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 12850801 - 12850864
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataa 252  Q
    |||||||| ||||||||||||||||||||||||  ||||||  || ||||| || |||||||||    
T  12850801 gagcaatgctatatatcaagaaagattttatcaagaaaattccaaaaatgacatggcagaataa 12850864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 221
Target Start/End: Original strand, 13664641 - 13664674
Alignment:
Q  188 agagcaatgttatatatcaagaaagattttatca 221  Q
    ||||||||||||||||| ||||||||||||||||    
T  13664641 agagcaatgttatatattaagaaagattttatca 13664674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 3574597 - 3574527
Alignment:
Q  184 aataagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  3574597 aataagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 3574527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 3456064 - 3456129
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||||||||||||||||||||||||  ||||||| ||||||||||| |||||||||||    
T  3456064 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgatatggcagaataatc 3456129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 8320649 - 8320584
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||||||||||||||||||||||||||  ||||||| ||||||||||| ||| |||||||    
T  8320649 gagcaatgttatatatcaagaaagattttatcaagaaaattttaagaatgatatggcaaaataatc 8320584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 48160905 - 48160970
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||||||||||||||||||||||||  ||||||| ||||||||||| |||||||||||    
T  48160905 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgatatggcagaataatc 48160970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 2754715 - 2754782
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  2754715 aagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 2754782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 187 - 253
Target Start/End: Original strand, 11347266 - 11347332
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataat 253  Q
    |||||||||| ||||||||||||||||||||||||  ||||||| |||||||| || ||||||||||    
T  11347266 aagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataat 11347332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 19650965 - 19650900
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||||||||| ||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  19650965 gagcaatgttatatattaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 19650900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 37217118 - 37217053
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  37217118 gagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggcagaataatc 37217053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 34482977 - 34482910
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| |||||||||||||||||||| |||  ||||||| ||||||||||| | |||||||||    
T  34482977 aagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggtagaataatc 34482910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 22426410 - 22426344
Alignment:
Q  188 agagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||||||||| ||||||||||||||||  ||||||| || ||||| || |||||||||||    
T  22426410 agagcaatgttatatattaagaaagattttatcaagaaaattttaaaaatgacatggcagaataatc 22426344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 6041884 - 6041949
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||||||||||||||||||||||||  ||||||| |||||||| ||  ||||||||||    
T  6041884 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 6041949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 33145713 - 33145777
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| |||||||||||||||||||||| | |||||||| |||||||| || |||||||||||    
T  33145713 gagcaatgctatatatcaagaaagattttatta-aaaaattttaagaatgacatggcagaataatc 33145777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 190 - 254
Target Start/End: Complemental strand, 9797093 - 9797029
Alignment:
Q  190 agcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||||||||||||||||||||| |||  |||| || |||||||| || |||||||||||    
T  9797093 agcaatgttatatatcaagaaagattttctcaagaaaaattcaagaatgacatggcagaataatc 9797029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 33113790 - 33113858
Alignment:
Q  186 taagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||| |||||||||||||||||||||| |  ||||||| |||||| | || |||||||||||    
T  33113790 taagagcaatgctatatatcaagaaagattttattaagaaaatttcaagaattacatggcagaataatc 33113858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 3137481 - 3137414
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| |||||||||||||||||||| |||  ||||||| |||||||| || ||| |||||||    
T  3137481 aagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcaaaataatc 3137414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 33839529 - 33839596
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||||||||||| |||||||||||||||| ||||| || |||||| | ||  ||||||||||    
T  33839529 aagagcaatgttatatattaagaaagattttatcaaaaaaaatttaagaataacatgacagaataatc 33839596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 188 - 239
Target Start/End: Original strand, 42297352 - 42297403
Alignment:
Q  188 agagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatga 239  Q
    ||||||||| ||||||||||||||||||||||||  ||||||| ||||||||    
T  42297352 agagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatga 42297403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 30385011 - 30385076
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||| ||||||||||||||||||||  ||||||| || ||||| || |||||||||||    
T  30385011 gagcaatgctatttatcaagaaagattttatcaagaaaatttcaaaaatgacatggcagaataatc 30385076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 26612784 - 26612848
Alignment:
Q  188 agagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataa 252  Q
    |||||||| ||||||||||| ||||||||||| | ||||| || |||||||| || |||||||||    
T  26612784 agagcaatattatatatcaaaaaagattttataaaaaaaaattcaagaatgacatggcagaataa 26612848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 37522051 - 37522118
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||  |||||||||||||||||||| |||  ||||||| |||||||| ||  ||||||||||    
T  37522051 aagagcaatactatatatcaagaaagattttttcaagaaaattttaagaatgacatgacagaataatc 37522118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 220
Target Start/End: Complemental strand, 47402665 - 47402630
Alignment:
Q  185 ataagagcaatgttatatatcaagaaagattttatc 220  Q
    |||||||||||| |||||||||||||||||||||||    
T  47402665 ataagagcaatgctatatatcaagaaagattttatc 47402630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 24343544 - 24343612
Alignment:
Q  186 taagagcaatgttatatatcaagaaagattttatc-agaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||||| ||| | | |||| |||||||||||    
T  24343544 taagagcaatgctatatattaagaaagattttatcaagaaaaattcaaa-attaatatggcagaataatc 24343612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 47738117 - 47738169
Alignment:
Q  201 atatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataat 253  Q
    |||||||||||||||||||||  |||  || ||||||||||| ||||||||||    
T  47738117 atatcaagaaagattttatcaagaaatattcaagaatgatatggcagaataat 47738169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 3060 - 3133
Alignment:
Q  181 aaaaataagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  3060 aaaaataacagcaatgctatatatcaagaaagattttatcaataaaattttaagaatgacatggcagaataatc 3133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 254
Target Start/End: Original strand, 19015392 - 19015469
Alignment:
Q  177 taataaaaataagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||| | ||||||||||| |||||||||||||||||||| |||  ||||||| ||||||||||| |||||||||||    
T  19015392 taataatattaagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggcagaataatc 19015469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 3559615 - 3559682
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||| ||||| |||||||||||||||||||||||| |||||||| |||||||| || |||||||||||    
T  3559615 aagaacaatgctatatatcaagaaagattttatcaaaaaaattttaagaatgacatggcagaataatc 3559682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 185 - 239
Target Start/End: Original strand, 25973410 - 25973464
Alignment:
Q  185 ataagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatga 239  Q
    |||||||||||||||||||||||||||||||||||||  ||||||| ||||||||    
T  25973410 ataagagcaatgttatatatcaagaaagattttatcatgaaaatttcaagaatga 25973464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 254
Target Start/End: Complemental strand, 41876508 - 41876442
Alignment:
Q  188 agagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||| |||||||||||||||||||| ||| |||||||| |||||||| || |||||||||||    
T  41876508 agagcaatgctatatatcaagaaagattttttcaaaaaaattttaagaatgacatggcagaataatc 41876442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 36966773 - 36966708
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| |||||||||||||||||||| |||  ||||||| ||||||||||| |||||||||||    
T  36966773 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggcagaataatc 36966708  T

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Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 37821899 - 37821834
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| |||||||||||||||||||| |||  ||||||| ||||||||||| |||||||||||    
T  37821899 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgatatggcagaataatc 37821834  T

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Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 40214988 - 40215053
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  40214988 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 40215053  T

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Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Complemental strand, 16045865 - 16045798
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||| |||| ||||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  16045865 aagagtaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 16045798  T

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Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 18404440 - 18404507
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| ||||||||||||||||||||||||  ||||||| |||||||| || | |||||||||    
T  18404440 aagagcaatgctatatatcaagaaagattttatcaagaaaattttaagaatgacatggtagaataatc 18404507  T

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Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 25463674 - 25463741
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| |||||||||||||||||||||| |  ||||||| |||||||| || |||||||||||    
T  25463674 aagagcaatgctatatatcaagaaagattttatgaagaaaattttaagaatgacatggcagaataatc 25463741  T

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Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Complemental strand, 9910358 - 9910293
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| |||||||||||||||||||| |||  ||||||| |||||||| || |||||||||||    
T  9910358 gagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 9910293  T

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Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 44094698 - 44094763
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| |||||||||||||| |||||||||  ||||||| |||||||| || |||||||||||    
T  44094698 gagcaatgctatatatcaagaaatattttatcaagaaaatttcaagaatgacatggcagaataatc 44094763  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 6883487 - 6883552
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||||||| |||||||||||| | |  ||||||| |||||||| || |||||||||||    
T  6883487 gagcaatgctatatattaagaaagatttttttaagaaaatttcaagaatgacatggcagaataatc 6883552  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 216
Target Start/End: Original strand, 10167414 - 10167442
Alignment:
Q  188 agagcaatgttatatatcaagaaagattt 216  Q
    |||||||||||||||||||||||||||||    
T  10167414 agagcaatgttatatatcaagaaagattt 10167442  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 253
Target Start/End: Complemental strand, 44691094 - 44691030
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataat 253  Q
    |||||||||| |||||||||||||||||||| | ||||  || |||||| | || ||||||||||    
T  44691094 gagcaatgttgtatatcaagaaagattttataaaaaaagattcaagaattacatggcagaataat 44691030  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 221
Target Start/End: Original strand, 52329319 - 52329351
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatca 221  Q
    ||||||||||||||||||||||||| |||||||    
T  52329319 gagcaatgttatatatcaagaaagaatttatca 52329351  T

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Target: scaffold0471 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 12840 - 12907
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| |||||||||||||||||||| |||  ||||||| |||||||| || |||||||||||    
T  12840 aagagcaatgctatatatcaagaaagattttttcaagaaaatttcaagaatgacatggcagaataatc 12907  T

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Target: scaffold0204 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 187 - 254
Target Start/End: Original strand, 4394 - 4461
Alignment:
Q  187 aagagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| |||||||||||||||||||| |||  ||||||| |||||||| || |||||||||||    
T  4394 aagagcaatgctatatatcaagaaagattttttcaagaaaattttaagaatgacatggcagaataatc 4461  T

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Target: scaffold0204; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 4654 - 4602
Alignment:
Q  201 atatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||||| |||||||| |||||||||| ||||||||||| ||| |||||||    
T  4654 atatcaagaatgattttataagaaaaattt-aagaatgatatggcacaataatc 4602  T

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Target: scaffold0178 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 11621 - 11686
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||||||||||||||||||||||||  ||||||| |||||||| ||  ||||||||||    
T  11621 gagcaatgctatatatcaagaaagattttatcaagaaaatttcaagaatgacatgacagaataatc 11686  T

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Target: scaffold0178; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 254
Target Start/End: Complemental strand, 11887 - 11827
Alignment:
Q  193 aatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||| |||||||||| |||||||| |||||||||| |||||||| || ||| |||||||    
T  11887 aatgttagatatcaagaatgattttataagaaaaattt-aagaatgacatggcacaataatc 11827  T

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Target: scaffold0085 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 254
Target Start/End: Original strand, 47850 - 47915
Alignment:
Q  189 gagcaatgttatatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    |||||||| ||| ||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  47850 gagcaatgctatttatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 47915  T

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Target: scaffold0228 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 8413 - 8467
Alignment:
Q  200 tatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  8413 tatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 8467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 15995 - 16049
Alignment:
Q  200 tatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  15995 tatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 16049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 200 - 254
Target Start/End: Original strand, 25947 - 26001
Alignment:
Q  200 tatatcaagaaagattttatcagaaaaatttaaagaatgatatagcagaataatc 254  Q
    ||||||||||||||||||||||  ||||||| |||||||| || |||||||||||    
T  25947 tatatcaagaaagattttatcaagaaaatttcaagaatgacatggcagaataatc 26001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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