View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6089_low_13 (Length: 240)
Name: NF6089_low_13
Description: NF6089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6089_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 222
Target Start/End: Complemental strand, 4684010 - 4683798
Alignment:
| Q |
10 |
tacaacagaaacaaactgattgtatttattttaggcctagaattgaacttaatatgaaagaaatgagctactatcagtcatctgactacagtgttgtcaa |
109 |
Q |
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| T |
4684010 |
tacaacagaaacaaactgattgtatttattttaggcctagaattgaacttaatatgaaagaaatgagctactatcagtcatctgactacagtgttgtcaa |
4683911 |
T |
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| Q |
110 |
ataggggcgtgctatagcatagcataatttgaacaaattattgttgtttcatgatactgactttagtacagtacaaaatattgtcaaataggggctatat |
209 |
Q |
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| T |
4683910 |
ataggggcgcgctatagcttagcataatttgaacaaattattgttgtttcatgatactgactttagtacagtacaaaatattgtcaaataggggctatat |
4683811 |
T |
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| Q |
210 |
cggcgctatagcg |
222 |
Q |
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| T |
4683810 |
cggcgctatagcg |
4683798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 147
Target Start/End: Original strand, 47859216 - 47859265
Alignment:
| Q |
98 |
cagtgttgtcaaataggggcgtgctatagcatagcataatttgaacaaat |
147 |
Q |
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| T |
47859216 |
cagtgttgttaaatagcggcttgctataccatagcagaatttgaacaaat |
47859265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 118 - 147
Target Start/End: Complemental strand, 27467954 - 27467925
Alignment:
| Q |
118 |
gtgctatagcatagcataatttgaacaaat |
147 |
Q |
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| T |
27467954 |
gtgctatagcatagcataatttgaacaaat |
27467925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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