View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6089_low_16 (Length: 236)
Name: NF6089_low_16
Description: NF6089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6089_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 15964587 - 15964808
Alignment:
| Q |
1 |
tgtttaaaggagatcgaaggaagcatttcaacttcaaatccaatactgtaacaggaactagcactatttccaaatattttccaccattacttggtactgt |
100 |
Q |
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| T |
15964587 |
tgtttaaaggagatcgaaggtgtcatttcaacttcaaatccaatactgtaacaggaaatagctctatttccaaatattttccaccattacttggtactgt |
15964686 |
T |
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| Q |
101 |
ctttgaaaagggtattgatgcagcttttaatactcactttgaaaatgaagttttcattttcaaagatcaatactatttacattacaatattaaagatgat |
200 |
Q |
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| T |
15964687 |
ctttgaaaagggtattgatgcagcttttaatactcactttgaaaatgaagttttcattttcaaagatcaatactatttacattacaatattaaagatgat |
15964786 |
T |
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| Q |
201 |
aagtttttaaatgggtacataa |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
15964787 |
aagtttttaaatgggtacataa |
15964808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 165
Target Start/End: Complemental strand, 17726510 - 17726436
Alignment:
| Q |
91 |
ttggtactgtctttgaaaagggtattgatgcagcttttaatactcactttgaaaatgaagttttcattttcaaag |
165 |
Q |
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| T |
17726510 |
ttggtactgtctttgaagggggtattgatgcagcttttaattctcaccttggcgatgaagttttcattttcaaag |
17726436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 17592583 - 17592526
Alignment:
| Q |
74 |
atattttccaccattacttggtactgtctttgaaaagggtattgatgcagcttttaat |
131 |
Q |
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| T |
17592583 |
atatttcccactatttcttggaactgtctttgaagggggtattgatgcagcttttaat |
17592526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 90 - 137
Target Start/End: Complemental strand, 17698880 - 17698833
Alignment:
| Q |
90 |
cttggtactgtctttgaaaagggtattgatgcagcttttaatactcac |
137 |
Q |
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| T |
17698880 |
cttggaactgtctttgaacatggtattgatgcagcttttaattctcac |
17698833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 165
Target Start/End: Complemental strand, 17735228 - 17735146
Alignment:
| Q |
83 |
accattacttggtactgtctttgaaaagggtattgatgcagcttttaatactcactttgaaaatgaagttttcattttcaaag |
165 |
Q |
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| T |
17735228 |
accatttcttggtactgtttttgaacaaggtatagacgcagcttttaattctaacattaataatgaagtttacatcttcaaag |
17735146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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