View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6089_low_17 (Length: 235)
Name: NF6089_low_17
Description: NF6089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6089_low_17 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 15964281 - 15964515
Alignment:
| Q |
1 |
ctcctggaggtaaaaagaaagatataatcagtggtccatcaaatattgctaatgggtttccaatgtttgccaatacaatctttaaatataaaatagattg |
100 |
Q |
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| T |
15964281 |
ctcctggaggtcaaaagaaagatataatcagtgctccaacaaatattgctggtgggtttccaatgtttgctaatacaatctttaaatataaaatagattg |
15964380 |
T |
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| Q |
101 |
ttcatttgacactggagacaatgttgcattcttcttctccggcgatcaatgcgcgaaaacaagctatactccaaattcattagcaaaagccagattactt |
200 |
Q |
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| T |
15964381 |
ttcatttgacactggagacaatgttgcattcttcttctccggcgatcaatgcgcgaaaacaagctacactccaaattcattagcaaaagccagattactt |
15964480 |
T |
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| Q |
201 |
caaggtcctatgccaatcaaaaccatgtttcctgc |
235 |
Q |
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| T |
15964481 |
caaggtcctatgccaatcaaaaccatgtttcctgc |
15964515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 17735622 - 17735404
Alignment:
| Q |
1 |
ctcctggaggtaaaaagaaagatataatcagtggtccatcaaatattgctaatgggtttccaatgtttgccaatacaatctttaaatataaaatagattg |
100 |
Q |
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| T |
17735622 |
ctcctggaggcaaaaagaaagatataattagtggtccaacaagtattgctgatgggtttccaatgtttgcacgaaccttatttcaatatcaaatagattg |
17735523 |
T |
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| Q |
101 |
ttcatttgacactggagacaatgttgcattcttcttctccggcgatcaatgcgcgaaaacaagctatactccaaattcattagcaaaagccagattactt |
200 |
Q |
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| T |
17735522 |
ttcatttgacatcggaaacaatgtgacatacttctttgctggagatcaatgtgcaaaaacagcgtatactccacactcaccagcaaaagccagaatactt |
17735423 |
T |
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| Q |
201 |
caaggtcctatgccaatca |
219 |
Q |
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| T |
17735422 |
gaaggtcctagtccaatca |
17735404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 85 - 233
Target Start/End: Complemental strand, 17726831 - 17726680
Alignment:
| Q |
85 |
aatataaaatagattgttcatttgacactggagacaatgttgcattcttcttctccggcgatcaatgcgcgaaaacaagctatactccaaat---tcatt |
181 |
Q |
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| T |
17726831 |
aatatcaaataggtagttcctttgacactggagacaatgtagcattcttcttctctagagatcaatgtgtaaaaacaaactactctccagatgcaccatc |
17726732 |
T |
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| Q |
182 |
agcaaaagccagattacttcaaggtcctatgccaatcaaaaccatgtttcct |
233 |
Q |
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| T |
17726731 |
agcaaaagccaggttacttcaagctcctactccaatcaaggtcatgtttcct |
17726680 |
T |
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