View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6089_low_4 (Length: 386)
Name: NF6089_low_4
Description: NF6089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6089_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 371
Target Start/End: Original strand, 3852954 - 3853307
Alignment:
| Q |
18 |
acctatacattagactcttttcatttgagtctctttgttctactgtttgttggttttgttcattttcagaagaagnnnnnnntgagaataagttagtagg |
117 |
Q |
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| T |
3852954 |
acctatacattagactcttttcatttgagtctctctgttctactgtttgttggttttgttcattttcagaagaagaaaaaaatgagaataagttagtagg |
3853053 |
T |
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| Q |
118 |
agtgtggtgaggttgtgtttgtgattgggggtttggaagagaaagacggagggtggcaaaatgagctttcatatgtccacccaatgctttaccattgatg |
217 |
Q |
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| T |
3853054 |
agtgtggtgaggttgtgtttgtggttgggggtttggaagagaaagacggagggtggcaaaatgagctttcatgtgtccacccaatgctttaccattgatg |
3853153 |
T |
|
| Q |
218 |
aatgttcttgagcaaagcttgcatttgtacctctccatttggcattgcatagagagaaaaaggtagaaaactagaaaggctttttattgtgatagaatat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3853154 |
aatgttcttgagcaaagcttgcatttgtacctctccatttggcattgcatagagagaaaaaggtagaaaactagaaaggctttttattgtgatagaatat |
3853253 |
T |
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| Q |
318 |
gtttagaggaatttggaaactaaaaagagtagcagctcacaagaatcccaccac |
371 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3853254 |
gtttagaggaatttggaaactaaaaagagtagcagctcacaagaatcccaccac |
3853307 |
T |
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