View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6089_low_5 (Length: 379)
Name: NF6089_low_5
Description: NF6089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6089_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 360
Target Start/End: Original strand, 2022096 - 2022428
Alignment:
| Q |
16 |
atctacgaaaatgctaacaatggagaatagatctcaaaacactattaatacccaacagaccaacgtcaattcattaccgtcacaaggtggggtaaatgta |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
2022096 |
atctacgaaaatgctaacaatggagaatagatctcaaaacagtgttaatacccaacagaccaacatcatttcattaccgtcacaaggtggggtaaatgta |
2022195 |
T |
|
| Q |
116 |
atgcaaccaaatctaaatacccatcagcctggtttcaatatgcttctgcaacaacaactgaaacatcagctgaaacatcagcaggaacttccatcatctc |
215 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2022196 |
atccaaccaaatctaaatacccatcagcctggtttcaatatgcttctgcaacaacaactga------------aacatcagcaggaacttccatcatctc |
2022283 |
T |
|
| Q |
216 |
agtttgtcacaagagaagcctttgatcagtttgtgcaacaaactcagaacatcattgatctaatcaacaaaaggcatgaacaaggagaagctgctagggc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2022284 |
agtttgtcacaagagaagcctttgatcagtttgtgcaacaaactcggaacttcattgatctaatcaacaaaaggcatgaacaaggagaagctgctagggc |
2022383 |
T |
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| Q |
316 |
tgctatgcaatcaactttggatttaatcttggctaagctttctag |
360 |
Q |
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| T |
2022384 |
tgctatgcaatcaaatttggatttaatcttggctaagctttctag |
2022428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 50 - 185
Target Start/End: Original strand, 2042467 - 2042602
Alignment:
| Q |
50 |
caaaacactattaatacccaacagaccaacgtcaattcattaccgtcacaaggtggggtaaatgtaatgcaaccaaatctaaatacccatcagcctggtt |
149 |
Q |
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| T |
2042467 |
caaaacactgttaatacccaacataccaacatcaattcattaccgtcacaaggtggggtaaatgtaatccaaccaaatctaaatacccatcagccaggtt |
2042566 |
T |
|
| Q |
150 |
tcaatatgcttctgcaacaacaactgaaacatcagc |
185 |
Q |
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| T |
2042567 |
ccaatatgcttcagcagcaacaactgaaacatcagc |
2042602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 2019488 - 2019529
Alignment:
| Q |
16 |
atctacgaaaatgctaacaatggagaatagatctcaaaacac |
57 |
Q |
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|||||||||||||||||||||||||| || |||||||||||| |
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| T |
2019488 |
atctacgaaaatgctaacaatggagattaaatctcaaaacac |
2019529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 2036217 - 2036258
Alignment:
| Q |
16 |
atctacgaaaatgctaacaatggagaatagatctcaaaacac |
57 |
Q |
| |
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||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
2036217 |
atctatgaaaatgctaacaatggagaataaatctcaaaacac |
2036258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 16 - 355
Target Start/End: Complemental strand, 48204663 - 48204351
Alignment:
| Q |
16 |
atctacgaaaatgctaacaatggagaatagatctcaaaacactattaatacccaacagaccaacgtcaattcattaccgtcacaaggtggggtaaatgta |
115 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
48204663 |
atctatgaaaatgctaacaatggagaataaatctcaaaacaccgttaatccccaacagaccaacatcaattcattaccgtcacaaggtgggg-----gta |
48204569 |
T |
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| Q |
116 |
atgcaaccaaatctaaatacccatcagcctggtttcaatatgcttctgcaacaacaactgaaacatcagctgaaacatcagcaggaacttccatcatctc |
215 |
Q |
| |
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|| |||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||||| || |
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| T |
48204568 |
atccaaccaaatctaaatacccatcagccaggtttcaatatgcttcaacaacaacaa------------ctgaaacatcagcaggaacttccatcatttc |
48204481 |
T |
|
| Q |
216 |
agtttgtcacaagagaagcctttgatcagtttgtgcaacaaactcagaacatcattgatctaatcaacaaaaggcatgaacaaggagaagctgctagggc |
315 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||||| |||||||||||||| |||||||| | | |
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| T |
48204480 |
agtttgtcacaagagaagcctttgatcagtttgtggaacaagctcagaacgtcattgatctaaccaacaaaaggcatg-acaaggag---------gagt |
48204391 |
T |
|
| Q |
316 |
tgctatgcaatcaactttggatttaatcttggctaagctt |
355 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
48204390 |
tgctatgcaatcaactttggatttaatcttggctaagctt |
48204351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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