View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6089_low_6 (Length: 269)

Name: NF6089_low_6
Description: NF6089
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6089_low_6
NF6089_low_6
[»] chr5 (3 HSPs)
chr5 (84-254)||(34218655-34218825)
chr5 (179-254)||(29716608-29716683)
chr5 (1-39)||(34218570-34218608)
[»] chr1 (11 HSPs)
chr1 (118-252)||(32759810-32759944)
chr1 (118-254)||(3593494-3593630)
chr1 (118-249)||(47371281-47371412)
chr1 (127-231)||(49236727-49236831)
chr1 (120-220)||(48966231-48966331)
chr1 (120-254)||(25253787-25253921)
chr1 (135-249)||(42304093-42304207)
chr1 (118-226)||(28403700-28403808)
chr1 (156-248)||(35176981-35177073)
chr1 (129-254)||(49452766-49452884)
chr1 (84-125)||(49452935-49452976)
[»] chr2 (8 HSPs)
chr2 (118-254)||(38295431-38295567)
chr2 (118-254)||(34342501-34342637)
chr2 (118-254)||(31846874-31847010)
chr2 (118-250)||(40829891-40830022)
chr2 (119-254)||(18727349-18727484)
chr2 (92-125)||(9731236-9731269)
chr2 (202-254)||(9731286-9731338)
chr2 (118-162)||(35404105-35404149)
[»] chr4 (9 HSPs)
chr4 (118-261)||(46286968-46287111)
chr4 (118-254)||(24966199-24966335)
chr4 (128-254)||(32890144-32890269)
chr4 (118-220)||(53574047-53574149)
chr4 (129-226)||(46862666-46862763)
chr4 (127-254)||(33139061-33139188)
chr4 (128-254)||(29509769-29509894)
chr4 (172-226)||(35518229-35518283)
chr4 (130-185)||(55165803-55165858)
[»] chr7 (8 HSPs)
chr7 (127-261)||(16709804-16709938)
chr7 (127-261)||(17684040-17684174)
chr7 (130-254)||(43172335-43172459)
chr7 (118-216)||(23017256-23017354)
chr7 (118-226)||(21486408-21486516)
chr7 (128-251)||(5771824-5771947)
chr7 (118-188)||(27149104-27149174)
chr7 (2-38)||(23017093-23017129)
[»] chr3 (9 HSPs)
chr3 (118-230)||(16155406-16155518)
chr3 (118-252)||(43173160-43173294)
chr3 (127-254)||(4962417-4962543)
chr3 (122-236)||(33693527-33693641)
chr3 (118-254)||(49458628-49458759)
chr3 (127-188)||(7667175-7667236)
chr3 (118-254)||(7437255-7437380)
chr3 (118-254)||(21386195-21386331)
chr3 (84-125)||(49458544-49458585)
[»] chr6 (8 HSPs)
chr6 (129-250)||(16438970-16439090)
chr6 (118-224)||(31534820-31534926)
chr6 (118-230)||(31975371-31975483)
chr6 (129-254)||(2607176-2607301)
chr6 (129-254)||(33640980-33641104)
chr6 (135-249)||(28900543-28900661)
chr6 (131-230)||(24194742-24194841)
chr6 (2-38)||(28900810-28900846)
[»] chr8 (15 HSPs)
chr8 (129-251)||(27878321-27878443)
chr8 (129-251)||(28018502-28018624)
chr8 (128-254)||(42423473-42423598)
chr8 (130-252)||(12522114-12522236)
chr8 (129-254)||(6387805-6387930)
chr8 (118-223)||(41394198-41394302)
chr8 (132-251)||(27915265-27915384)
chr8 (132-251)||(27961684-27961803)
chr8 (118-226)||(8029571-8029679)
chr8 (127-220)||(44976998-44977091)
chr8 (179-250)||(12737794-12737865)
chr8 (130-221)||(27974728-27974819)
chr8 (130-221)||(28031997-28032088)
chr8 (128-183)||(24082472-24082527)
chr8 (84-125)||(12522291-12522332)
[»] scaffold0013 (1 HSPs)
scaffold0013 (118-257)||(89541-89680)
[»] scaffold0573 (2 HSPs)
scaffold0573 (135-249)||(9133-9251)
scaffold0573 (2-38)||(8948-8984)
[»] scaffold0037 (1 HSPs)
scaffold0037 (120-176)||(36968-37024)


Alignment Details
Target: chr5 (Bit Score: 143; Significance: 3e-75; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 84 - 254
Target Start/End: Original strand, 34218655 - 34218825
Alignment:
Q  84 caaaacctaattcattttctacaaattcaaagactgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagtta 183  Q
    |||||||||||| |||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34218655 caaaacctaatttattttctacaaactcaaagaatgaaacgtgtctttttctctcttctctgagttctcaaaccatgaataggggagcacatatcagtta 34218754  T
Q  184 gggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtg 254  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34218755 gggttgcaattccgacggtggaaattcagatttcgacgccggtgattgtgacgtcagttagggttgcggtg 34218825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 179 - 254
Target Start/End: Complemental strand, 29716683 - 29716608
Alignment:
Q  179 agttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtg 254  Q
    |||||||||||| |||||||| |||||||||||| ||||||| ||| |||||  |||||||||||||||| |||||    
T  29716683 agttagggttgcgatttcgacggtggaaattcagttttcgacaccgatgattacgacgtcggttagggttacggtg 29716608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 34218570 - 34218608
Alignment:
Q  1 tgtaaactcgaccgagtttaccatgttttacgagtttaa 39  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  34218570 tgtaaactcgaccgagtttaccgtgttttacgagtttaa 34218608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 118 - 252
Target Start/End: Complemental strand, 32759944 - 32759810
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttc 217  Q
    |||||| | |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||| |||| ||| |||||||||||||    
T  32759944 tgaaacatttctttttctttcttctctgagttctcaaaccatgaacaagggagcacatatcagttagggttgcgattccgacggtgaaaattcagatttc 32759845  T
Q  218 gacgccggtgattgtgacgtcggttagggttgcgg 252  Q
    |||||||||||||| ||| ||||||||||||||||    
T  32759844 gacgccggtgattgcgacatcggttagggttgcgg 32759810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 118 - 254
Target Start/End: Original strand, 3593494 - 3593630
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttc 217  Q
    ||||| || |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||  |||  |||||||||||||||||||||    
T  3593494 tgaaatgtttctttttctttcttctctaagttctcaatccatgaataggggagcacatatcagttagtgttgtgattctgacagtggaaattcagatttc 3593593  T
Q  218 gacgccggtgattgtgacgtcggttagggttgcggtg 254  Q
    ||||||  |||||| |||  |||||||||||||||||    
T  3593594 gacgccaatgattgcgacaccggttagggttgcggtg 3593630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 118 - 249
Target Start/End: Complemental strand, 47371412 - 47371281
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttc 217  Q
    ||||| || |||||||||||||||||||||||||||||||| ||| | ||||||||||| || ||||||||||||||||||| ||||||| | |||||||    
T  47371412 tgaaatgtttctttttctttcttctctgagttctcaaaccacgaacatgggagcacataccaattagggttgcaatttcgacggtggaaacttagatttc 47371313  T
Q  218 gacgccggtgattgtgacgtcggttagggttg 249  Q
    ||||||||||||||  | | ||||||||||||    
T  47371312 gacgccggtgattgcaatgccggttagggttg 47371281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 127 - 231
Target Start/End: Complemental strand, 49236831 - 49236727
Alignment:
Q  127 tctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggt 226  Q
    |||||||||||||||||| ||||||||||||||||| | ||||||||||| || |||||||||| |||||||| ||| ||||||||||||||||| || |    
T  49236831 tctttttctttcttctctaagttctcaaaccatgaacatgggagcacataccaattagggttgcgatttcgacggtgaaaattcagatttcgacgtcgat 49236732  T
Q  227 gattg 231  Q
    |||||    
T  49236731 gattg 49236727  T

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Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 120 - 220
Target Start/End: Complemental strand, 48966331 - 48966231
Alignment:
Q  120 aaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcga 219  Q
    |||||| |||||||||||||||||| ||||||||||||||||| | |||||||||||  ||||| |||||||||| |||| ||||||||||| |||||||    
T  48966331 aaacgtttctttttctttcttctctaagttctcaaaccatgaacatgggagcacatactagttatggttgcaattccgacggtggaaattcaaatttcga 48966232  T
Q  220 c 220  Q
    |    
T  48966231 c 48966231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 120 - 254
Target Start/End: Original strand, 25253787 - 25253921
Alignment:
Q  120 aaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcga 219  Q
    |||||| |||||||||||||| |  ||||||||||||| |||||| ||||| ||||| | ||||||||||| | | | || ||||||||||| |||||||    
T  25253787 aaacgtttctttttctttctttttcgagttctcaaaccttgaataagggagtacataccggttagggttgcgaatccaacggtggaaattcatatttcga 25253886  T
Q  220 cgccggtgattgtgacgtcggttagggttgcggtg 254  Q
    |||||||||||| ||||||   |||||||||||||    
T  25253887 cgccggtgattgcgacgtcaaatagggttgcggtg 25253921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 135 - 249
Target Start/End: Complemental strand, 42304207 - 42304093
Alignment:
Q  135 tttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtga 234  Q
    |||||| ||| ||||||||||||||||| ||||||||||||| || |||||||||  |||  ||| ||||||||||| ||||| ||||||||||||||||    
T  42304207 tttcttttctaagttctcaaaccatgaacaggggagcacataccatttagggttgtgattcagacggtggaaattcatatttcaacgccggtgattgtga 42304108  T
Q  235 cgtcggttagggttg 249  Q
    |   |||||||||||    
T  42304107 cactggttagggttg 42304093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 28403808 - 28403700
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttc 217  Q
    |||||||| ||||||| ||||||| |||||||||||||||||||| |||||||||||||  ||||||||||   ||| ||||  || |||||||||||||    
T  28403808 tgaaacgtttctttttatttcttcactgagttctcaaaccatgaacaggggagcacataaaagttagggttatgattccgactatgaaaattcagatttc 28403709  T
Q  218 gacgccggt 226  Q
     ||||||||    
T  28403708 aacgccggt 28403700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 248
Target Start/End: Complemental strand, 35177073 - 35176981
Alignment:
Q  156 ccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggtt 248  Q
    ||||||| || ||||| |||| |||| |||||||| ||| |||| ||||||||||||||||||||| ||||||||| |||| |||||||||||    
T  35177073 ccatgaacagaggagcgcataccagtgagggttgcgattccgacggtggaaattcagatttcgacgtcggtgattgcgacgccggttagggtt 35176981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 254
Target Start/End: Complemental strand, 49452884 - 49452766
Alignment:
Q  129 tttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtga 228  Q
    |||||||||||||||| ||||||| |||       ||||||||| ||| ||||||||||||| ||| | || ||||||| ||| |||||||||||| | |    
T  49452884 tttttctttcttctctaagttctcgaac-------aggggagcatataccagttagggttgcgattccaacggtggaaagtcatatttcgacgccgttta 49452792  T
Q  229 ttgtgacgtcggttagggttgcggtg 254  Q
    ||| |||| |||||||||||||||||    
T  49452791 ttgcgacgccggttagggttgcggtg 49452766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 49452976 - 49452935
Alignment:
Q  84 caaaacctaattcattttctacaaattcaaagactgaaacgt 125  Q
    ||||||| |||||||||||||||| | |||||||||||||||    
T  49452976 caaaaccaaattcattttctacaagtccaaagactgaaacgt 49452935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 118 - 254
Target Start/End: Complemental strand, 38295567 - 38295431
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttc 217  Q
    |||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||| ||| |||| ||||||||||| |||||    
T  38295567 tgaaacgtttctttttctttcttctctgagttctcaaaccataaacaggggagcacataccagttagggttgcgattccgactgtggaaattcatatttc 38295468  T
Q  218 gacgccggtgattgtgacgtcggttagggttgcggtg 254  Q
    || | |||||||||||||| |||||||||||||||||    
T  38295467 gatgtcggtgattgtgacgccggttagggttgcggtg 38295431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 118 - 254
Target Start/End: Original strand, 34342501 - 34342637
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttc 217  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| ||| | || ||||||||||| |||||    
T  34342501 tgaaacgtttctttttctttcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacggtggaaattcatatttc 34342600  T
Q  218 gacgccggtgattgtgacgtcggttagggttgcggtg 254  Q
    ||||| ||| |||| ||||||||||||||||| ||||    
T  34342601 gacgctggtaattgcgacgtcggttagggttgtggtg 34342637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 118 - 254
Target Start/End: Complemental strand, 31847010 - 31846874
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttc 217  Q
    |||||||| ||||||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||||| ||| ||||  |||||||| |||||||    
T  31847010 tgaaacgtttctttttcttttttctctgagttctcaaaccataaacaggggagcacataccagttagggttgcgattccgacgatggaaatttagatttc 31846911  T
Q  218 gacgccggtgattgtgacgtcggttagggttgcggtg 254  Q
     ||||| ||||||| ||||   |||||||||||||||    
T  31846910 aacgccagtgattgcgacgcttgttagggttgcggtg 31846874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 118 - 250
Target Start/End: Original strand, 40829891 - 40830022
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttc 217  Q
    |||||||| |||||||||||||||||| ||||||||||||||||| |||||||||  || ||||||||||||| |||| ||| |||||||||||||||||    
T  40829891 tgaaacgtttctttttctttcttctctaagttctcaaaccatgaacaggggagcatgtaccagttagggttgcgattttgacggtggaaattcagatttc 40829990  T
Q  218 gacgccggtgattgtgacgtcggttagggttgc 250  Q
     |||| | |||||| |||| |||||||||||||    
T  40829991 cacgctgatgattgcgacg-cggttagggttgc 40830022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 254
Target Start/End: Complemental strand, 18727484 - 18727349
Alignment:
Q  119 gaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcg 218  Q
    ||||||| | |||| ||| ||| |||||||||| |||||||||| | | ||||||||| || |||||||||| ||| |||  | | |||||  |||| ||    
T  18727484 gaaacgttttttttacttccttatctgagttcttaaaccatgaacaagagagcacataccaattagggttgcgattccgatggggtaaatttcgattgcg 18727385  T
Q  219 acgccggtgattgtgacgtcggttagggttgcggtg 254  Q
    || ||| |||||||||||  |||| |||||||||||    
T  18727384 acaccgatgattgtgacgctggttggggttgcggtg 18727349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 125
Target Start/End: Original strand, 9731236 - 9731269
Alignment:
Q  92 aattcattttctacaaattcaaagactgaaacgt 125  Q
    ||||||||||||||||| ||||||||||||||||    
T  9731236 aattcattttctacaaactcaaagactgaaacgt 9731269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 254
Target Start/End: Original strand, 9731286 - 9731338
Alignment:
Q  202 tggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgcggtg 254  Q
    ||||||||||||||| |||| || |||||| |||| || ||||||||||||||    
T  9731286 tggaaattcagattttgacgtcgatgattgcgacgccgattagggttgcggtg 9731338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Complemental strand, 35404149 - 35404105
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaa 162  Q
    |||||||| |||||||||||  |||| ||||||||||||||||||    
T  35404149 tgaaacgtttctttttcttttgtctccgagttctcaaaccatgaa 35404105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 118 - 261
Target Start/End: Original strand, 46286968 - 46287111
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttc 217  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| ||| | ||  |||||||||| |||||    
T  46286968 tgaaacgtttctttttctttcttctccgagttctcaaaccatgaataagggagcacataccagttagggttgcgattccaacgatggaaattcaaatttc 46287067  T
Q  218 gacgccggtgattgtgacgtcggttagggttgcggtgatgatgt 261  Q
    ||| || ||||||| |||||||||||||||||||||| ||||||    
T  46287068 gactcccgtgattgcgacgtcggttagggttgcggtggtgatgt 46287111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 118 - 254
Target Start/End: Complemental strand, 24966335 - 24966199
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttc 217  Q
    ||||| || |||||||||||||||||||||||||||||||| ||| | ||||| ||||| || |||||||||| |||||||| ||||||| | |||||||    
T  24966335 tgaaatgtttctttttctttcttctctgagttctcaaaccacgaacatgggagtacataccaattagggttgcgatttcgacggtggaaacttagatttc 24966236  T
Q  218 gacgccggtgattgtgacgtcggttagggttgcggtg 254  Q
    |||||||| |||||  | | |||||||||||||||||    
T  24966235 gacgccggagattgcaatgccggttagggttgcggtg 24966199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 128 - 254
Target Start/End: Original strand, 32890144 - 32890269
Alignment:
Q  128 ctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtg 227  Q
    |||||||||||||| ||||||| |||||||||||| | ||||||||||| |||||| |||||| ||| | || ||||||||||| ||||||||| |||||    
T  32890144 ctttttctttcttccctgagttttcaaaccatgaacatgggagcacataccagttatggttgc-attccaacggtggaaattcatatttcgacgtcggtg 32890242  T
Q  228 attgtgacgtcggttagggttgcggtg 254  Q
    |||| |||| |||||||||||||||||    
T  32890243 attgcgacgccggttagggttgcggtg 32890269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 118 - 220
Target Start/End: Complemental strand, 53574149 - 53574047
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttc 217  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||| |||| ||| |||||||||||   ||| |||| |||||||||| ||||||    
T  53574149 tgaaacgtttctttttctttcttctctgagttctcaaaccatgaacagggtagcatataccagttagggttctgattccgacggtggaaattccgatttc 53574050  T
Q  218 gac 220  Q
    |||    
T  53574049 gac 53574047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 129 - 226
Target Start/End: Complemental strand, 46862763 - 46862666
Alignment:
Q  129 tttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggt 226  Q
    ||||| |||||| ||||||||||||||||||||| |||||||||||||  |||||||||||| ||| |||| || |||||||||||||||||| ||||    
T  46862763 tttttttttcttttctgagttctcaaaccatgaacaggggagcacatactagttagggttgcgattccgacggtagaaattcagatttcgacgtcggt 46862666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 254
Target Start/End: Original strand, 33139061 - 33139188
Alignment:
Q  127 tctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggt 226  Q
    |||||||||||||| | ||||||||||||| | ||| | ||||||| ||| || |||||||||  ||| |||| |||||||||||||||||||| ||| |    
T  33139061 tctttttctttcttatatgagttctcaaactaagaacatgggagcagataccaattagggttgtgattccgacggtggaaattcagatttcgactccgat 33139160  T
Q  227 gattgtgacgtcggttagggttgcggtg 254  Q
    |||||  ||| |||||||||||||||||    
T  33139161 gattgcaacgccggttagggttgcggtg 33139188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 128 - 254
Target Start/End: Complemental strand, 29509894 - 29509769
Alignment:
Q  128 ctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtg 227  Q
    ||||||||||||||  |||||| |||||||||||| | |||||||| || |||||| ||||||| || | || ||||||||||||| ||| |||||||||    
T  29509894 ctttttctttcttccttgagttttcaaaccatgaacatgggagcacgtaccagttatggttgca-ttccaacggtggaaattcagagttcaacgccggtg 29509796  T
Q  228 attgtgacgtcggttagggttgcggtg 254  Q
    |||| |||| | |||||||||||||||    
T  29509795 attgcgacgccagttagggttgcggtg 29509769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 35518283 - 35518229
Alignment:
Q  172 acatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggt 226  Q
    ||||| ||||||||||||| |||||||| ||||||||||||||||| ||| ||||    
T  35518283 acataccagttagggttgcgatttcgaccgtggaaattcagatttcaacgtcggt 35518229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 185
Target Start/End: Original strand, 55165803 - 55165858
Alignment:
Q  130 ttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagg 185  Q
    ||||||||||||| |||||| |||||||||||| ||  ||||||||| ||||||||    
T  55165803 ttttctttcttctttgagttatcaaaccatgaaaagatgagcacataccagttagg 55165858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 9e-42; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 127 - 261
Target Start/End: Original strand, 16709804 - 16709938
Alignment:
Q  127 tctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggt 226  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||| |||| ||||||||||||||||| ||| ||||    
T  16709804 tctttttctttcttctctgagttctcaaaccatgaacaggggagcacataccagttagggttgcgattccgacggtggaaattcagatttcaacgtcggt 16709903  T
Q  227 gattgtgacgtcggttagggttgcggtgatgatgt 261  Q
    ||||| |||  | ||||||||||||||| ||||||    
T  16709904 gattgcgacaccagttagggttgcggtggtgatgt 16709938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 127 - 261
Target Start/End: Original strand, 17684040 - 17684174
Alignment:
Q  127 tctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggt 226  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||| |||| ||||||||||||||||| ||| ||||    
T  17684040 tctttttctttcttctctgagttctcaaaccatgaacaggggagcacataccagttagggttgcgattccgacggtggaaattcagatttcaacgtcggt 17684139  T
Q  227 gattgtgacgtcggttagggttgcggtgatgatgt 261  Q
    ||||| |||  | ||||||||||||||| ||||||    
T  17684140 gattgcgacaccagttagggttgcggtggtgatgt 17684174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 130 - 254
Target Start/End: Original strand, 43172335 - 43172459
Alignment:
Q  130 ttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgat 229  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||| |||  |||  ||||||||||||||||||||||| ||||    
T  43172335 ttttctttcttctctaagttctcaatccatgaataggggagcacataccagttagggttgcgattctgacgatggaaattcagatttcgacgccgatgat 43172434  T
Q  230 tgtgacgtcggttagggttgcggtg 254  Q
    || |||  |||||||||||||||||    
T  43172435 tgcgacaccggttagggttgcggtg 43172459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 216
Target Start/End: Original strand, 23017256 - 23017354
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagattt 216  Q
    |||||||| |||||||||||||||||||||||||||||||||||| | |||| |||||| ||||||||||||| |||  ||| ||||||||||||||||    
T  23017256 tgaaacgtttctttttctttcttctctgagttctcaaaccatgaacatgggaccacataccagttagggttgcgattctgacggtggaaattcagattt 23017354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 118 - 226
Target Start/End: Original strand, 21486408 - 21486516
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttc 217  Q
    |||||||| |||||||||||||||||| ||| ||||||||||||| |||| ||||||||  |||||||||||  ||| ||||  ||||||||||||||||    
T  21486408 tgaaacgtttctttttctttcttctctaagtcctcaaaccatgaacagggaagcacatactagttagggttgtgattccgacgatggaaattcagatttc 21486507  T
Q  218 gacgccggt 226  Q
    |||||||||    
T  21486508 gacgccggt 21486516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 251
Target Start/End: Complemental strand, 5771947 - 5771824
Alignment:
Q  128 ctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtg 227  Q
    ||||||||||||| ||||||||||||||  ||||| | | ||||||||| ||||||||||| | ||| |||||| |||||||| || | | || ||||||    
T  5771947 ctttttctttcttatctgagttctcaaaagatgaacatgagagcacataccagttagggttacgattccgacaggggaaattctgactgcaacaccggtg 5771848  T
Q  228 attgtgacgtcggttagggttgcg 251  Q
    || ||||||  |||||| ||||||    
T  5771847 atcgtgacgctggttagagttgcg 5771824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 188
Target Start/End: Original strand, 27149104 - 27149174
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggtt 188  Q
    |||| ||| ||||| |||||||||| ||||||||||||||||||| || | |||||||| |||||||||||    
T  27149104 tgaagcgtttctttctctttcttctttgagttctcaaaccatgaacagtgaagcacataccagttagggtt 27149174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 23017093 - 23017129
Alignment:
Q  2 gtaaactcgaccgagtttaccatgttttacgagttta 38  Q
    |||||||||||||||||||| | ||||||||||||||    
T  23017093 gtaaactcgaccgagtttacaaagttttacgagttta 23017129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 118 - 230
Target Start/End: Original strand, 16155406 - 16155518
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttc 217  Q
    ||||| || ||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||| |||||||||||||| |||||||    
T  16155406 tgaaatgtttctttttctttcttctctgagttctcaaaccatcaacaggggagcacataccagttagggttgcaattccgacagtggaaatttagatttc 16155505  T
Q  218 gacgccggtgatt 230  Q
    ||| |||||||||    
T  16155506 gacaccggtgatt 16155518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 118 - 252
Target Start/End: Original strand, 43173160 - 43173294
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttc 217  Q
    |||||||| |||||||||||||||||| |||| |||||||||||||||||||||||||| ||||||| ||||| ||| ||||  | |||| ||| |||||    
T  43173160 tgaaacgtttctttttctttcttctctaagttttcaaaccatgaataggggagcacataccagttagagttgcgattccgacgatagaaactcatatttc 43173259  T
Q  218 gacgccggtgattgtgacgtcggttagggttgcgg 252  Q
    ||||| |||||||| || | |||||||||||||||    
T  43173260 gacgctggtgattgcgatgccggttagggttgcgg 43173294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 127 - 254
Target Start/End: Complemental strand, 4962543 - 4962417
Alignment:
Q  127 tctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggt 226  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||  ||| |||||||||||  |||||||  || |    
T  4962543 tctttttctt-cttctctgagttctcaaaccatgaacaggggagcacatatcagttagggctgcgattcagacggtggaaattcatgtttcgacatcgat 4962445  T
Q  227 gattgtgacgtcggttagggttgcggtg 254  Q
    ||||| ||||| ||||||||||||||||    
T  4962444 gattgcgacgttggttagggttgcggtg 4962417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 122 - 236
Target Start/End: Original strand, 33693527 - 33693641
Alignment:
Q  122 acgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacg 221  Q
    |||| |||||||||||||||||||| ||||||||||||||| |||| |||||||| |||||| ||||| ||||||||| | | ||||||||||||| | |    
T  33693527 acgtttctttttctttcttctctgaattctcaaaccatgaacagggaagcacataccagttatggttgtaatttcgacggggaaaattcagatttcaatg 33693626  T
Q  222 ccggtgattgtgacg 236  Q
    || ||||||| ||||    
T  33693627 cctgtgattgcgacg 33693641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 118 - 254
Target Start/End: Original strand, 49458628 - 49458759
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttc 217  Q
    |||||| | |||||||||||| ||||||||||||||||||||||| | || |||||||| |||||||||||||     |||| ||||||||||| || ||    
T  49458628 tgaaacatttctttttctttcctctctgagttctcaaaccatgaaaatggaagcacataccagttagggttgc-----cgacggtggaaattcatatatc 49458722  T
Q  218 gacgccggtgattgtgacgtcggttagggttgcggtg 254  Q
    |||| ||||||||| | || |||||||||||| ||||    
T  49458723 gacgtcggtgattgcgtcgccggttagggttgtggtg 49458759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 7667175 - 7667236
Alignment:
Q  127 tctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggtt 188  Q
    |||||||||||||||||| ||||||||||||||||| ||| ||||||||| |||||||||||    
T  7667175 tctttttctttcttctcttagttctcaaaccatgaacaggagagcacataccagttagggtt 7667236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 254
Target Start/End: Complemental strand, 7437380 - 7437255
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttc 217  Q
    |||||||| |||||||||||||||||| |||||||||| |||||| ||||||||||||  |||||| ||||          | |||||||||||||||||    
T  7437380 tgaaacgtttctttttctttcttctct-agttctcaaatcatgaacaggggagcacatgccagttaaggtt----------cggtggaaattcagatttc 7437292  T
Q  218 gacgccggtgattgtgacgtcggttagggttgcggtg 254  Q
    |||| | ||||||| ||||  |||||| |||||||||    
T  7437291 gacgtcagtgattgcgacgctggttagagttgcggtg 7437255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 118 - 254
Target Start/End: Complemental strand, 21386331 - 21386195
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttc 217  Q
    ||||| || ||||||||||| || |||||||||| ||| ||| || | | ||||||||| ||||||||||| | ||| |||| | |||||||| |||| |    
T  21386331 tgaaatgtttctttttcttttttatctgagttcttaaaacataaacatgagagcacataccagttagggttacgattccgacgggggaaattccgattgc 21386232  T
Q  218 gacgccggtgattgtgacgtcggttagggttgcggtg 254  Q
    |||| ||||| |   || || ||||||||||||||||    
T  21386231 gacgtcggtgttaaggatgttggttagggttgcggtg 21386195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 125
Target Start/End: Original strand, 49458544 - 49458585
Alignment:
Q  84 caaaacctaattcattttctacaaattcaaagactgaaacgt 125  Q
    ||||||| |||||||||||||||| | |||||||||||||||    
T  49458544 caaaaccaaattcattttctacaagtccaaagactgaaacgt 49458585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 129 - 250
Target Start/End: Original strand, 16438970 - 16439090
Alignment:
Q  129 tttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtga 228  Q
    ||||||||||||||| |||||||||||||||||| | ||||||||||| ||||||||||||| || | ||||||||||||| ||||||||||||||||||    
T  16438970 tttttctttcttctcggagttctcaaaccatgaacatgggagcacataccagttagggttgcgatct-gacagtggaaatttagatttcgacgccggtga 16439068  T
Q  229 ttgtgacgtcggttagggttgc 250  Q
    ||| ||||| ||||||||||||    
T  16439069 ttgcgacgttggttagggttgc 16439090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 224
Target Start/End: Complemental strand, 31534926 - 31534820
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttc 217  Q
    |||||| | |||||| ||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  31534926 tgaaacctttcttttactttcttctctgagttctcaaaccatgaacaagagagcacatatcagttagggttgcgatttcgacggtggaaattcagatttc 31534827  T
Q  218 gacgccg 224  Q
    |||||||    
T  31534826 gacgccg 31534820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 118 - 230
Target Start/End: Complemental strand, 31975483 - 31975371
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttc 217  Q
    |||||||| | |||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||||| ||| |||  ||||||||||| ||||     
T  31975483 tgaaacgtttttttttctttcttctctaagttctcaaaccatgaacaggggagcacataccagttagggttgcgattccgaaggtggaaattcatatttt 31975384  T
Q  218 gacgccggtgatt 230  Q
    ||| |||||||||    
T  31975383 gacaccggtgatt 31975371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 129 - 254
Target Start/End: Original strand, 2607176 - 2607301
Alignment:
Q  129 tttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtga 228  Q
    |||||||||||||| ||||||||||||||||||| | | ||||||||| |||||||  |||| ||| |||| ||||||||||| ||||||||  ||||||    
T  2607176 tttttctttcttctatgagttctcaaaccatgaacatgagagcacataccagttagcattgcgattccgacggtggaaattcatatttcgacatcggtga 2607275  T
Q  229 ttgtgacgtcggttagggttgcggtg 254  Q
    ||| |||| |||||||||||| ||||    
T  2607276 ttgcgacgccggttagggttgtggtg 2607301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 129 - 254
Target Start/End: Complemental strand, 33641104 - 33640980
Alignment:
Q  129 tttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtga 228  Q
    ||||||||||||| ||||||| |||||||||||| | ||||||||||| |||||| |||||| ||| | || ||||||||||||||||||||| ||||||    
T  33641104 tttttctttcttccctgagttttcaaaccatgaacatgggagcacataccagttatggttgc-attccaacggtggaaattcagatttcgacgtcggtga 33641006  T
Q  229 ttgtgacgtcggttagggttgcggtg 254  Q
    ||| ||||   |||||||||||||||    
T  33641005 ttgcgacgcaagttagggttgcggtg 33640980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 249
Target Start/End: Complemental strand, 28900661 - 28900543
Alignment:
Q  135 tttcttctctgagttctcaaaccatgaataggggagcacatat----cagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgatt 230  Q
    |||||||||||||||||||||||||||| ||||||||||||||    ||||||||||||  |||||||| ||||||||||| ||||| |||||| | |||    
T  28900661 tttcttctctgagttctcaaaccatgaacaggggagcacatatataccagttagggttgtgatttcgacggtggaaattcatatttcaacgccgtttatt 28900562  T
Q  231 gtgacgtcggttagggttg 249  Q
    | |||  ||||||||||||    
T  28900561 gcgacaccggttagggttg 28900543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 131 - 230
Target Start/End: Original strand, 24194742 - 24194841
Alignment:
Q  131 tttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgatt 230  Q
    |||| ||||||| | ||||||||||||||||| | ||||||| ||| ||||||||||||| | | |||| ||||||||||| |||| |||| ||||||||    
T  24194742 tttccttcttctataagttctcaaaccatgaacatgggagcatataccagttagggttgcgactccgacggtggaaattcatattttgacgtcggtgatt 24194841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Complemental strand, 28900846 - 28900810
Alignment:
Q  2 gtaaactcgaccgagtttaccatgttttacgagttta 38  Q
    |||||||||||||||||||||| ||||||||||||||    
T  28900846 gtaaactcgaccgagtttaccaagttttacgagttta 28900810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 129 - 251
Target Start/End: Complemental strand, 27878443 - 27878321
Alignment:
Q  129 tttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtga 228  Q
    ||||||||||||||||||||||| |||||||||| | ||||||||||| || | |||||||  ||| ||| |||||||||| ||||||||||||||||||    
T  27878443 tttttctttcttctctgagttctgaaaccatgaacatgggagcacataccaatcagggttgtcattccgaaagtggaaatttagatttcgacgccggtga 27878344  T
Q  229 ttgtgacgtcggttagggttgcg 251  Q
    |||| | ||||||||||||||||    
T  27878343 ttgttatgtcggttagggttgcg 27878321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 129 - 251
Target Start/End: Complemental strand, 28018624 - 28018502
Alignment:
Q  129 tttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtga 228  Q
    ||||||||||||||||||||||| |||||||||| | ||||||||||| || | |||||||  ||| ||| |||||||||| ||||||||||||||||||    
T  28018624 tttttctttcttctctgagttctgaaaccatgaacatgggagcacataccaatcagggttgtcattccgaaagtggaaatttagatttcgacgccggtga 28018525  T
Q  229 ttgtgacgtcggttagggttgcg 251  Q
    |||| | ||||||||||||||||    
T  28018524 ttgttatgtcggttagggttgcg 28018502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 128 - 254
Target Start/End: Original strand, 42423473 - 42423598
Alignment:
Q  128 ctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtg 227  Q
    |||||||||||||| ||||||| |||||||||||| | | ||||||||| |||||| ||||||| || | || |||||||||||||||||||||||||||    
T  42423473 ctttttctttcttccctgagttttcaaaccatgaacatgagagcacataccagttatggttgca-ttccaacggtggaaattcagatttcgacgccggtg 42423571  T
Q  228 attgtgacgtcggttagggttgcggtg 254  Q
    |||| |||| | |||||||||||||||    
T  42423572 attgcgacgccagttagggttgcggtg 42423598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 252
Target Start/End: Complemental strand, 12522236 - 12522114
Alignment:
Q  130 ttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgat 229  Q
    ||||||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||| ||| || | ||||||||||||||| |||||||| ||||    
T  12522236 ttttctttcttctctaagttctcaaacgatgaacaggggagcacataccagttagggttgcgattccggcggtggaaattcagattgcgacgccgatgat 12522137  T
Q  230 tgtgacgtcggttagggttgcgg 252  Q
    || |  |||| || |||||||||    
T  12522136 tgcgttgtcgatttgggttgcgg 12522114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 129 - 254
Target Start/End: Complemental strand, 6387930 - 6387805
Alignment:
Q  129 tttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtga 228  Q
    ||||| |||||| ||||||||||||||||||||| | | |||||||||| |||||||||||| |||||||  | |||||||| |||| | ||||||||||    
T  6387930 tttttttttcttatctgagttctcaaaccatgaacatgagagcacatattagttagggttgcgatttcgatgggggaaattccgattgcaacgccggtga 6387831  T
Q  229 ttgtgacgtcggttagggttgcggtg 254  Q
    ||| || || ||||||||||||||||    
T  6387830 ttgcgatgttggttagggttgcggtg 6387805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 118 - 223
Target Start/End: Original strand, 41394198 - 41394302
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttc 217  Q
    ||||| || |||||||||||||||||| |||||||||| |||||| ||||||||||||| ||||||||||||| ||| ||||| | ||||||||||||||    
T  41394198 tgaaaggtttctttttctttcttctctaagttctcaaatcatgaacaggggagcacataccagttagggttgcgattccgacaat-gaaattcagatttc 41394296  T
Q  218 gacgcc 223  Q
    ||||||    
T  41394297 gacgcc 41394302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 251
Target Start/End: Complemental strand, 27915384 - 27915265
Alignment:
Q  132 ttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattg 231  Q
    |||||||||||||||||||| |||||||||| | ||||||||||| || | |||||||  ||| ||| || | ||||| |||||||||||||||||||||    
T  27915384 ttctttcttctctgagttctgaaaccatgaacatgggagcacataccaatcagggttgtgattccgaaagcgaaaatttagatttcgacgccggtgattg 27915285  T
Q  232 tgacgtcggttagggttgcg 251  Q
    | | ||||||||||||||||    
T  27915284 ttatgtcggttagggttgcg 27915265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 132 - 251
Target Start/End: Complemental strand, 27961803 - 27961684
Alignment:
Q  132 ttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattg 231  Q
    |||||||||||||||||||| |||||||||| | ||||||||||| || | |||||||  ||| ||| || | ||||| |||||||||||||||||||||    
T  27961803 ttctttcttctctgagttctgaaaccatgaacatgggagcacataccaatcagggttgtgattccgaaagcgaaaatttagatttcgacgccggtgattg 27961704  T
Q  232 tgacgtcggttagggttgcg 251  Q
    | | ||||||||||||||||    
T  27961703 ttatgtcggttagggttgcg 27961684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 118 - 226
Target Start/End: Complemental strand, 8029679 - 8029571
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttc 217  Q
    |||||||| |||||||||||||||||||| ||||||||| ||||| ||||||||||||| ||||||  ||||| ||| |||| || |||||||| |||||    
T  8029679 tgaaacgtttctttttctttcttctctgaattctcaaactatgaacaggggagcacataccagttaatgttgcgattccgacggtagaaattcatatttc 8029580  T
Q  218 gacgccggt 226  Q
     ||||||||    
T  8029579 cacgccggt 8029571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 44976998 - 44977091
Alignment:
Q  127 tctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgac 220  Q
    ||||||||||||| || ||||||||||||||||||| ||||||||||||| | ||||| ||| | |||  ||| ||| ||||||||||||||||    
T  44976998 tctttttctttctactatgagttctcaaaccatgaacaggggagcacatacctgttagagttacgattctgacggtgaaaattcagatttcgac 44977091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 12737865 - 12737794
Alignment:
Q  179 agttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgattgtgacgtcggttagggttgc 250  Q
    |||||||||||| ||| |||| ||| ||||||||||||||| |||| |||||| ||||| ||||||||||||    
T  12737865 agttagggttgcgattccgacggtgaaaattcagatttcgatgccgatgattgcgacgttggttagggttgc 12737794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 27974819 - 27974728
Alignment:
Q  130 ttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacg 221  Q
    ||||||||||||||| |||||| |||| ||||| | ||||||||||| || |||||||||  |||  ||| ||||||||| ||||| |||||    
T  27974819 ttttctttcttctctaagttctgaaactatgaacatgggagcacataccaattagggttgtgattctgacggtggaaatttagattccgacg 27974728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 221
Target Start/End: Complemental strand, 28032088 - 28031997
Alignment:
Q  130 ttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttcgacg 221  Q
    ||||||||||||||| |||||| |||| ||||| | ||||||||||| || |||||||||  |||  ||| ||||||||| ||||| |||||    
T  28032088 ttttctttcttctctaagttctgaaactatgaacatgggagcacataccaattagggttgtgattctgacggtggaaatttagattccgacg 28031997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 24082472 - 24082527
Alignment:
Q  128 ctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagtta 183  Q
    ||||||||||||| ||| |||||||||| |||||| ||| ||||||||| ||||||    
T  24082472 ctttttctttcttatctaagttctcaaatcatgaacaggagagcacataacagtta 24082527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 84 - 125
Target Start/End: Complemental strand, 12522332 - 12522291
Alignment:
Q  84 caaaacctaattcattttctacaaattcaaagactgaaacgt 125  Q
    ||||||| |||||||||||||||||  |||||||||||||||    
T  12522332 caaaacccaattcattttctacaaacccaaagactgaaacgt 12522291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 257
Target Start/End: Original strand, 89541 - 89680
Alignment:
Q  118 tgaaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacatatcagttagggttgcaatttcgacagtggaaattcagatttc 217  Q
    |||||||| |||||||||||||||||||||||||||||||||||| | || |||| ||| ||||||||||||| ||| |||| ||||||||||| |||||    
T  89541 tgaaacgtttctttttctttcttctctgagttctcaaaccatgaacatggaagcatataacagttagggttgcgattccgacggtggaaattcatatttc 89640  T
Q  218 gacgccggtgattgtgacgtcggttagggttgcggtgatg 257  Q
    | ||  || ||||  |||| ||||||||||||| ||||||    
T  89641 gccgtaggcgattacgacgccggttagggttgcagtgatg 89680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0573
Description:

Target: scaffold0573; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 249
Target Start/End: Original strand, 9133 - 9251
Alignment:
Q  135 tttcttctctgagttctcaaaccatgaataggggagcacatat----cagttagggttgcaatttcgacagtggaaattcagatttcgacgccggtgatt 230  Q
    |||||||||||||||||||||||||||| ||||||||||||||    ||||||||||||  |||||||| ||||||||||| ||||| |||||| | |||    
T  9133 tttcttctctgagttctcaaaccatgaacaggggagcacatatataccagttagggttgtgatttcgacggtggaaattcatatttcaacgccgtttatt 9232  T
Q  231 gtgacgtcggttagggttg 249  Q
    | |||  ||||||||||||    
T  9233 gcgacaccggttagggttg 9251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0573; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 38
Target Start/End: Original strand, 8948 - 8984
Alignment:
Q  2 gtaaactcgaccgagtttaccatgttttacgagttta 38  Q
    |||||||||||||||||||||| ||||||||||||||    
T  8948 gtaaactcgaccgagtttaccaagttttacgagttta 8984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 37024 - 36968
Alignment:
Q  120 aaacgtgtctttttctttcttctctgagttctcaaaccatgaataggggagcacata 176  Q
    |||||| |||||||||||||||||| ||||||||||||||||| | ||||| |||||    
T  37024 aaacgtttctttttctttcttctctaagttctcaaaccatgaacatgggagtacata 36968  T

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